Strain Fitness in Pseudomonas simiae WCS417 around PS417_07725

Experiment: root sample 6; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_07720 and PS417_07725 overlap by 1 nucleotidesPS417_07725 and PS417_07730 are separated by 212 nucleotides PS417_07720: PS417_07720 - chemotaxis protein CheY, at 1,699,321 to 1,700,502 _07720 PS417_07725: PS417_07725 - anti-anti-sigma factor, at 1,700,502 to 1,700,984 _07725 PS417_07730: PS417_07730 - transaldolase, at 1,701,197 to 1,702,123 _07730 Position (kb) 1700 1701Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1701.049 kb on + strandat 1701.049 kb on + strandat 1701.049 kb on + strandat 1701.050 kb on - strandat 1701.053 kb on + strandat 1701.053 kb on + strandat 1701.053 kb on + strandat 1701.054 kb on - strandat 1701.054 kb on - strandat 1701.188 kb on + strandat 1701.189 kb on - strandat 1701.189 kb on - strandat 1701.256 kb on + strandat 1701.589 kb on - strand, within PS417_07730

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Per-strain Table

Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB
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1,701,049 + +2.1
1,701,049 + -0.4
1,701,049 + -0.2
1,701,050 - -1.3
1,701,053 + +0.7
1,701,053 + +2.0
1,701,053 + -0.6
1,701,054 - -0.4
1,701,054 - -0.3
1,701,188 + +0.7
1,701,189 - -2.9
1,701,189 - +0.2
1,701,256 + -0.6
1,701,589 - PS417_07730 0.42 +1.5

Or see this region's nucleotide sequence