Strain Fitness in Pseudomonas simiae WCS417 around PS417_07675

Experiment: root sample 6; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_07665 and PS417_07670 overlap by 8 nucleotidesPS417_07670 and PS417_07675 are separated by 61 nucleotidesPS417_07675 and PS417_07680 are separated by 106 nucleotides PS417_07665: PS417_07665 - cell division protein FtsX, at 1,689,735 to 1,690,985 _07665 PS417_07670: PS417_07670 - ABC transporter, at 1,690,978 to 1,691,676 _07670 PS417_07675: PS417_07675 - multidrug ABC transporter substrate-binding protein, at 1,691,738 to 1,692,982 _07675 PS417_07680: PS417_07680 - ATPase, at 1,693,089 to 1,694,435 _07680 Position (kb) 1691 1692 1693Strain fitness (log2 ratio) -1 0 1at 1692.975 kb on - strandat 1692.975 kb on - strandat 1692.988 kb on + strandat 1692.989 kb on - strandat 1693.035 kb on + strandat 1693.035 kb on + strandat 1693.036 kb on - strandat 1693.036 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB
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1,692,975 - -1.3
1,692,975 - +1.5
1,692,988 + +1.7
1,692,989 - -0.5
1,693,035 + -0.2
1,693,035 + -1.0
1,693,036 - -1.3
1,693,036 - +1.1

Or see this region's nucleotide sequence