Experiment: root sample 6; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_07655 and PS417_07660 are separated by 46 nucleotides PS417_07660 and PS417_07665 are separated by 94 nucleotides PS417_07665 and PS417_07670 overlap by 8 nucleotides PS417_07670 and PS417_07675 are separated by 61 nucleotides
PS417_07655: PS417_07655 - glycerophosphodiester phosphodiesterase, at 1,688,287 to 1,689,009
_07655
PS417_07660: PS417_07660 - pilus assembly protein PilZ, at 1,689,056 to 1,689,640
_07660
PS417_07665: PS417_07665 - cell division protein FtsX, at 1,689,735 to 1,690,985
_07665
PS417_07670: PS417_07670 - ABC transporter, at 1,690,978 to 1,691,676
_07670
PS417_07675: PS417_07675 - multidrug ABC transporter substrate-binding protein, at 1,691,738 to 1,692,982
_07675
Position (kb) 1689
1690
1691 Strain fitness (log2 ratio) -2
-1
0
1 at 1688.814 kb on - strand at 1688.920 kb on + strand, within PS417_07655 at 1688.996 kb on + strand at 1688.996 kb on + strand at 1688.997 kb on - strand at 1688.997 kb on - strand at 1688.997 kb on - strand at 1688.997 kb on - strand at 1689.124 kb on - strand, within PS417_07660 at 1689.606 kb on + strand at 1689.606 kb on + strand at 1689.674 kb on + strand at 1689.674 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB remove 1,688,814 - +1.7 1,688,920 + PS417_07655 0.88 -1.0 1,688,996 + -2.4 1,688,996 + -0.8 1,688,997 - +0.3 1,688,997 - -1.1 1,688,997 - -1.0 1,688,997 - +0.7 1,689,124 - PS417_07660 0.12 +0.1 1,689,606 + +1.7 1,689,606 + -0.2 1,689,674 + -1.1 1,689,674 + -0.8
Or see this region's nucleotide sequence