Strain Fitness in Pseudomonas simiae WCS417 around PS417_07100

Experiment: root sample 6; outgrowth in LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_07090 and PS417_07095 are separated by 0 nucleotidesPS417_07095 and PS417_07100 are separated by 36 nucleotidesPS417_07100 and PS417_07105 are separated by 140 nucleotidesPS417_07105 and PS417_07110 overlap by 17 nucleotidesPS417_07110 and PS417_07115 overlap by 32 nucleotides PS417_07090: PS417_07090 - histidine kinase, at 1,568,949 to 1,570,334 _07090 PS417_07095: PS417_07095 - histidine kinase, at 1,570,335 to 1,571,156 _07095 PS417_07100: PS417_07100 - aminomethyltransferase, at 1,571,193 to 1,572,134 _07100 PS417_07105: PS417_07105 - hypothetical protein, at 1,572,275 to 1,572,529 _07105 PS417_07110: PS417_07110 - hypothetical protein, at 1,572,513 to 1,572,959 _07110 PS417_07115: PS417_07115 - L-aspartate oxidase, at 1,572,928 to 1,574,544 _07115 Position (kb) 1571 1572 1573Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1570.339 kb on + strandat 1570.340 kb on - strandat 1570.471 kb on + strand, within PS417_07095at 1570.471 kb on + strand, within PS417_07095at 1570.471 kb on + strand, within PS417_07095at 1570.471 kb on + strand, within PS417_07095at 1570.471 kb on + strand, within PS417_07095at 1570.472 kb on - strand, within PS417_07095at 1570.472 kb on - strand, within PS417_07095at 1570.472 kb on - strand, within PS417_07095at 1570.502 kb on - strand, within PS417_07095at 1570.613 kb on + strand, within PS417_07095at 1570.660 kb on + strandat 1570.769 kb on - strand, within PS417_07095at 1570.804 kb on - strand, within PS417_07095at 1570.889 kb on - strand, within PS417_07095at 1570.889 kb on - strand, within PS417_07095at 1570.889 kb on - strand, within PS417_07095at 1570.889 kb on - strand, within PS417_07095at 1571.121 kb on + strandat 1571.167 kb on + strandat 1571.168 kb on - strandat 1571.227 kb on + strandat 1571.227 kb on + strandat 1572.170 kb on + strandat 1572.170 kb on + strandat 1572.170 kb on + strandat 1572.170 kb on + strandat 1572.193 kb on + strandat 1572.193 kb on + strandat 1572.246 kb on - strandat 1572.246 kb on - strandat 1572.247 kb on + strandat 1572.247 kb on + strandat 1572.527 kb on + strandat 1572.528 kb on - strandat 1572.528 kb on - strandat 1572.530 kb on + strandat 1572.576 kb on + strand, within PS417_07110at 1572.631 kb on - strand, within PS417_07110at 1572.631 kb on - strand, within PS417_07110at 1572.631 kb on - strand, within PS417_07110at 1572.689 kb on + strand, within PS417_07110at 1573.001 kb on + strandat 1573.001 kb on + strandat 1573.103 kb on + strand, within PS417_07115at 1573.103 kb on + strand, within PS417_07115at 1573.103 kb on + strand, within PS417_07115at 1573.104 kb on - strand, within PS417_07115at 1573.104 kb on - strand, within PS417_07115at 1573.107 kb on + strand, within PS417_07115at 1573.107 kb on + strand, within PS417_07115at 1573.113 kb on - strand, within PS417_07115

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB
remove
1,570,339 + +1.3
1,570,340 - -1.4
1,570,471 + PS417_07095 0.17 +0.7
1,570,471 + PS417_07095 0.17 +0.6
1,570,471 + PS417_07095 0.17 +2.1
1,570,471 + PS417_07095 0.17 -0.7
1,570,471 + PS417_07095 0.17 +1.2
1,570,472 - PS417_07095 0.17 +0.5
1,570,472 - PS417_07095 0.17 +1.1
1,570,472 - PS417_07095 0.17 -0.6
1,570,502 - PS417_07095 0.20 +0.7
1,570,613 + PS417_07095 0.34 +2.0
1,570,660 + +0.7
1,570,769 - PS417_07095 0.53 +1.1
1,570,804 - PS417_07095 0.57 +0.7
1,570,889 - PS417_07095 0.67 +0.3
1,570,889 - PS417_07095 0.67 +0.5
1,570,889 - PS417_07095 0.67 -0.3
1,570,889 - PS417_07095 0.67 -1.3
1,571,121 + +2.2
1,571,167 + +0.4
1,571,168 - -0.6
1,571,227 + +0.6
1,571,227 + +0.7
1,572,170 + -0.2
1,572,170 + -0.5
1,572,170 + -0.2
1,572,170 + -0.0
1,572,193 + -0.0
1,572,193 + +1.0
1,572,246 - -0.6
1,572,246 - +0.8
1,572,247 + +0.4
1,572,247 + -1.1
1,572,527 + +1.5
1,572,528 - +0.9
1,572,528 - -1.7
1,572,530 + -2.4
1,572,576 + PS417_07110 0.14 -2.3
1,572,631 - PS417_07110 0.26 +0.4
1,572,631 - PS417_07110 0.26 -0.7
1,572,631 - PS417_07110 0.26 -3.0
1,572,689 + PS417_07110 0.39 -0.2
1,573,001 + -1.6
1,573,001 + +0.3
1,573,103 + PS417_07115 0.11 -0.5
1,573,103 + PS417_07115 0.11 -0.5
1,573,103 + PS417_07115 0.11 -0.3
1,573,104 - PS417_07115 0.11 +1.2
1,573,104 - PS417_07115 0.11 +0.4
1,573,107 + PS417_07115 0.11 +2.1
1,573,107 + PS417_07115 0.11 +0.5
1,573,113 - PS417_07115 0.11 +0.1

Or see this region's nucleotide sequence