Strain Fitness in Pseudomonas simiae WCS417 around PS417_06240

Experiment: root sample 6; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_06230 and PS417_06235 are separated by 0 nucleotidesPS417_06235 and PS417_06240 overlap by 4 nucleotidesPS417_06240 and PS417_06245 are separated by 53 nucleotides PS417_06230: PS417_06230 - farnesyl-diphosphate synthase, at 1,382,098 to 1,382,853 _06230 PS417_06235: PS417_06235 - phosphatidate cytidylyltransferase, at 1,382,854 to 1,383,660 _06235 PS417_06240: PS417_06240 - 1-deoxy-D-xylulose 5-phosphate reductoisomerase, at 1,383,657 to 1,384,847 _06240 PS417_06245: PS417_06245 - zinc metallopeptidase RseP, at 1,384,901 to 1,386,253 _06245 Position (kb) 1383 1384 1385Strain fitness (log2 ratio) -2 -1 0 1at 1384.913 kb on + strandat 1384.913 kb on + strandat 1384.913 kb on + strandat 1384.914 kb on - strandat 1384.955 kb on - strandat 1385.151 kb on + strand, within PS417_06245at 1385.356 kb on + strand, within PS417_06245at 1385.544 kb on + strand, within PS417_06245at 1385.545 kb on - strand, within PS417_06245

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Per-strain Table

Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB
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1,384,913 + -0.0
1,384,913 + -1.3
1,384,913 + -1.0
1,384,914 - -0.5
1,384,955 - -0.6
1,385,151 + PS417_06245 0.18 -0.5
1,385,356 + PS417_06245 0.34 -0.7
1,385,544 + PS417_06245 0.48 -1.8
1,385,545 - PS417_06245 0.48 -0.3

Or see this region's nucleotide sequence