Strain Fitness in Pseudomonas simiae WCS417 around PS417_06215

Experiment: root sample 6; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_06210 and PS417_06215 are separated by 203 nucleotidesPS417_06215 and PS417_06220 are separated by 211 nucleotidesPS417_06220 and PS417_06225 overlap by 4 nucleotides PS417_06210: PS417_06210 - 30S ribosomal protein S2, at 1,378,767 to 1,379,504 _06210 PS417_06215: PS417_06215 - elongation factor Ts, at 1,379,708 to 1,380,571 _06215 PS417_06220: PS417_06220 - uridylate kinase, at 1,380,783 to 1,381,526 _06220 PS417_06225: PS417_06225 - ribosome-recycling factor, at 1,381,523 to 1,382,080 _06225 Position (kb) 1379 1380 1381Strain fitness (log2 ratio) -3 -2 -1 0 1at 1379.590 kb on + strandat 1379.590 kb on + strandat 1379.590 kb on + strandat 1379.605 kb on + strandat 1379.629 kb on + strandat 1379.629 kb on + strandat 1379.629 kb on + strandat 1380.569 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB
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1,379,590 + +0.6
1,379,590 + -1.5
1,379,590 + -1.6
1,379,605 + -0.5
1,379,629 + -0.7
1,379,629 + -1.8
1,379,629 + -2.8
1,380,569 + +0.7

Or see this region's nucleotide sequence