Strain Fitness in Pseudomonas simiae WCS417 around PS417_05340

Experiment: root sample 6; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_05330 and PS417_05335 overlap by 4 nucleotidesPS417_05335 and PS417_05340 are separated by 21 nucleotidesPS417_05340 and PS417_05345 are separated by 10 nucleotidesPS417_05345 and PS417_05350 are separated by 13 nucleotides PS417_05330: PS417_05330 - fimbrial assembly protein, at 1,183,717 to 1,186,242 _05330 PS417_05335: PS417_05335 - molecular chaperone, at 1,186,239 to 1,187,000 _05335 PS417_05340: PS417_05340 - fimbrial protein, at 1,187,022 to 1,187,594 _05340 PS417_05345: PS417_05345 - exotoxin, at 1,187,605 to 1,188,099 _05345 PS417_05350: PS417_05350 - pilus assembly protein, at 1,188,113 to 1,188,592 _05350 Position (kb) 1187 1188Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1186.033 kb on + strandat 1186.466 kb on - strand, within PS417_05335at 1186.567 kb on - strand, within PS417_05335at 1186.569 kb on + strand, within PS417_05335at 1186.569 kb on + strand, within PS417_05335at 1186.570 kb on - strand, within PS417_05335at 1186.644 kb on - strand, within PS417_05335at 1186.751 kb on + strand, within PS417_05335at 1186.758 kb on - strand, within PS417_05335at 1186.764 kb on + strand, within PS417_05335at 1186.764 kb on + strandat 1186.765 kb on - strand, within PS417_05335at 1186.765 kb on - strand, within PS417_05335at 1186.765 kb on - strand, within PS417_05335at 1186.765 kb on - strand, within PS417_05335at 1186.767 kb on + strand, within PS417_05335at 1186.767 kb on + strand, within PS417_05335at 1186.768 kb on - strand, within PS417_05335at 1186.768 kb on - strand, within PS417_05335at 1186.768 kb on - strand, within PS417_05335at 1186.879 kb on + strand, within PS417_05335at 1186.880 kb on - strand, within PS417_05335at 1186.906 kb on - strand, within PS417_05335at 1186.956 kb on - strandat 1186.999 kb on - strandat 1186.999 kb on - strandat 1187.748 kb on + strand, within PS417_05345at 1187.807 kb on - strand, within PS417_05345at 1187.824 kb on + strand, within PS417_05345at 1187.825 kb on - strand, within PS417_05345at 1188.297 kb on - strand, within PS417_05350at 1188.466 kb on + strand, within PS417_05350at 1188.574 kb on - strandat 1188.584 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB
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1,186,033 + -1.5
1,186,466 - PS417_05335 0.30 -0.8
1,186,567 - PS417_05335 0.43 +1.6
1,186,569 + PS417_05335 0.43 +0.2
1,186,569 + PS417_05335 0.43 +4.7
1,186,570 - PS417_05335 0.43 -0.8
1,186,644 - PS417_05335 0.53 +0.6
1,186,751 + PS417_05335 0.67 -0.4
1,186,758 - PS417_05335 0.68 -1.8
1,186,764 + PS417_05335 0.69 +0.7
1,186,764 + +0.7
1,186,765 - PS417_05335 0.69 +0.1
1,186,765 - PS417_05335 0.69 +1.1
1,186,765 - PS417_05335 0.69 +0.5
1,186,765 - PS417_05335 0.69 +0.8
1,186,767 + PS417_05335 0.69 +0.0
1,186,767 + PS417_05335 0.69 +0.9
1,186,768 - PS417_05335 0.69 +0.3
1,186,768 - PS417_05335 0.69 -0.2
1,186,768 - PS417_05335 0.69 +0.7
1,186,879 + PS417_05335 0.84 +0.4
1,186,880 - PS417_05335 0.84 -2.6
1,186,906 - PS417_05335 0.88 -1.1
1,186,956 - +0.9
1,186,999 - +0.3
1,186,999 - +0.5
1,187,748 + PS417_05345 0.29 +3.1
1,187,807 - PS417_05345 0.41 +1.1
1,187,824 + PS417_05345 0.44 -0.1
1,187,825 - PS417_05345 0.44 -0.4
1,188,297 - PS417_05350 0.38 +0.4
1,188,466 + PS417_05350 0.74 -0.4
1,188,574 - +0.1
1,188,584 + +0.2

Or see this region's nucleotide sequence