Strain Fitness in Pseudomonas simiae WCS417 around PS417_05185

Experiment: root sample 6; outgrowth in LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_05180 and PS417_05185 are separated by 5 nucleotidesPS417_05185 and PS417_05190 are separated by 150 nucleotidesPS417_05190 and PS417_05195 overlap by 8 nucleotides PS417_05180: PS417_05180 - elongation factor 4, at 1,149,788 to 1,151,587 _05180 PS417_05185: PS417_05185 - signal peptidase, at 1,151,593 to 1,152,447 _05185 PS417_05190: PS417_05190 - ribonuclease III, at 1,152,598 to 1,153,287 _05190 PS417_05195: PS417_05195 - GTPase Era, at 1,153,280 to 1,154,182 _05195 Position (kb) 1151 1152 1153Strain fitness (log2 ratio) -1 0 1at 1152.445 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB
remove
1,152,445 + -0.7

Or see this region's nucleotide sequence