Strain Fitness in Agrobacterium fabrum C58 around Atu5533

Experiment: 4-Hydroxybenzoic Acid (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAtu5532 and Atu5533 are separated by 1 nucleotidesAtu5533 and Atu5534 are separated by 1 nucleotidesAtu5534 and Atu5535 overlap by 1 nucleotides Atu5532: Atu5532 - ABC transporter membrane spanning protein, at 526,472 to 527,281 Atu5532 Atu5533: Atu5533 - ABC transporter membrane spanning protein, at 527,283 to 528,422 Atu5533 Atu5534: Atu5534 - ABC transporter nucleotide binding/ATPase, at 528,424 to 529,173 Atu5534 Atu5535: Atu5535 - ABC transporter nucleotide binding/ATPase, at 529,173 to 529,868 Atu5535 Position (kb) 527 528 529Strain fitness (log2 ratio) -2 -1 0 1 2at 526.285 kb on - strandat 526.402 kb on + strandat 526.416 kb on + strandat 526.422 kb on - strandat 526.493 kb on - strandat 526.531 kb on + strandat 526.569 kb on + strand, within Atu5532at 526.670 kb on + strand, within Atu5532at 526.707 kb on + strand, within Atu5532at 526.709 kb on - strand, within Atu5532at 526.713 kb on + strand, within Atu5532at 526.713 kb on + strand, within Atu5532at 526.715 kb on - strand, within Atu5532at 526.782 kb on + strand, within Atu5532at 526.830 kb on - strand, within Atu5532at 526.916 kb on - strand, within Atu5532at 526.925 kb on + strand, within Atu5532at 526.974 kb on + strand, within Atu5532at 527.017 kb on - strand, within Atu5532at 527.142 kb on - strand, within Atu5532at 527.143 kb on - strand, within Atu5532at 527.260 kb on + strandat 527.273 kb on - strandat 527.273 kb on - strandat 527.419 kb on + strand, within Atu5533at 527.424 kb on + strand, within Atu5533at 527.514 kb on - strand, within Atu5533at 527.528 kb on - strand, within Atu5533at 527.676 kb on - strand, within Atu5533at 527.682 kb on - strand, within Atu5533at 527.767 kb on + strand, within Atu5533at 527.785 kb on - strand, within Atu5533at 527.808 kb on - strand, within Atu5533at 527.832 kb on + strand, within Atu5533at 527.893 kb on + strand, within Atu5533at 527.901 kb on - strand, within Atu5533at 527.908 kb on + strand, within Atu5533at 527.930 kb on + strand, within Atu5533at 527.999 kb on - strand, within Atu5533at 527.999 kb on - strand, within Atu5533at 527.999 kb on - strand, within Atu5533at 528.024 kb on - strand, within Atu5533at 528.047 kb on - strand, within Atu5533at 528.094 kb on - strand, within Atu5533at 528.100 kb on + strand, within Atu5533at 528.163 kb on - strand, within Atu5533at 528.163 kb on - strand, within Atu5533at 528.165 kb on + strand, within Atu5533at 528.210 kb on + strand, within Atu5533at 528.210 kb on + strand, within Atu5533at 528.218 kb on - strand, within Atu5533at 528.218 kb on - strand, within Atu5533at 528.237 kb on - strand, within Atu5533at 528.263 kb on + strand, within Atu5533at 528.345 kb on - strandat 528.368 kb on + strandat 528.531 kb on + strand, within Atu5534at 528.600 kb on + strand, within Atu5534at 528.608 kb on - strand, within Atu5534at 528.722 kb on + strand, within Atu5534at 528.754 kb on - strand, within Atu5534at 528.754 kb on - strand, within Atu5534at 528.819 kb on - strand, within Atu5534at 528.874 kb on - strand, within Atu5534at 528.884 kb on + strand, within Atu5534at 528.902 kb on - strand, within Atu5534at 528.939 kb on + strand, within Atu5534at 528.977 kb on - strand, within Atu5534at 528.977 kb on - strand, within Atu5534at 528.979 kb on + strand, within Atu5534at 528.987 kb on - strand, within Atu5534at 529.018 kb on - strand, within Atu5534at 529.043 kb on - strand, within Atu5534at 529.098 kb on - strand, within Atu5534at 529.098 kb on - strand, within Atu5534at 529.117 kb on + strandat 529.125 kb on - strandat 529.156 kb on - strandat 529.204 kb on - strandat 529.204 kb on - strandat 529.228 kb on + strandat 529.228 kb on + strandat 529.228 kb on + strandat 529.236 kb on - strandat 529.236 kb on - strandat 529.236 kb on - strandat 529.301 kb on + strand, within Atu5535at 529.301 kb on + strand, within Atu5535at 529.309 kb on + strand, within Atu5535at 529.364 kb on - strand, within Atu5535at 529.397 kb on + strand, within Atu5535at 529.401 kb on + strand, within Atu5535at 529.416 kb on + strand, within Atu5535at 529.421 kb on + strand, within Atu5535

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C)
remove
526,285 - -2.2
526,402 + -0.7
526,416 + +0.0
526,422 - +1.0
526,493 - +0.1
526,531 + -0.2
526,569 + Atu5532 0.12 +0.3
526,670 + Atu5532 0.24 +0.1
526,707 + Atu5532 0.29 +0.2
526,709 - Atu5532 0.29 -0.3
526,713 + Atu5532 0.30 +0.4
526,713 + Atu5532 0.30 -0.1
526,715 - Atu5532 0.30 +0.4
526,782 + Atu5532 0.38 +0.1
526,830 - Atu5532 0.44 +0.9
526,916 - Atu5532 0.55 +0.3
526,925 + Atu5532 0.56 -0.4
526,974 + Atu5532 0.62 +0.4
527,017 - Atu5532 0.67 +0.3
527,142 - Atu5532 0.83 +0.2
527,143 - Atu5532 0.83 -0.3
527,260 + +0.5
527,273 - +0.0
527,273 - +0.0
527,419 + Atu5533 0.12 +0.3
527,424 + Atu5533 0.12 +0.5
527,514 - Atu5533 0.20 -0.1
527,528 - Atu5533 0.21 -0.2
527,676 - Atu5533 0.34 +1.4
527,682 - Atu5533 0.35 -0.5
527,767 + Atu5533 0.42 +1.0
527,785 - Atu5533 0.44 +1.0
527,808 - Atu5533 0.46 +0.1
527,832 + Atu5533 0.48 +0.2
527,893 + Atu5533 0.54 +2.0
527,901 - Atu5533 0.54 -1.3
527,908 + Atu5533 0.55 +0.2
527,930 + Atu5533 0.57 +0.9
527,999 - Atu5533 0.63 -0.5
527,999 - Atu5533 0.63 +0.2
527,999 - Atu5533 0.63 +0.7
528,024 - Atu5533 0.65 -0.1
528,047 - Atu5533 0.67 +0.5
528,094 - Atu5533 0.71 +0.5
528,100 + Atu5533 0.72 -0.0
528,163 - Atu5533 0.77 +0.6
528,163 - Atu5533 0.77 +0.3
528,165 + Atu5533 0.77 +0.5
528,210 + Atu5533 0.81 -0.2
528,210 + Atu5533 0.81 -0.7
528,218 - Atu5533 0.82 +0.0
528,218 - Atu5533 0.82 +0.0
528,237 - Atu5533 0.84 +0.8
528,263 + Atu5533 0.86 +1.3
528,345 - -0.3
528,368 + +0.5
528,531 + Atu5534 0.14 -0.1
528,600 + Atu5534 0.23 -0.1
528,608 - Atu5534 0.25 -0.0
528,722 + Atu5534 0.40 -0.6
528,754 - Atu5534 0.44 +0.4
528,754 - Atu5534 0.44 +1.0
528,819 - Atu5534 0.53 -0.4
528,874 - Atu5534 0.60 +0.1
528,884 + Atu5534 0.61 +0.5
528,902 - Atu5534 0.64 -0.1
528,939 + Atu5534 0.69 -0.8
528,977 - Atu5534 0.74 -0.0
528,977 - Atu5534 0.74 -0.2
528,979 + Atu5534 0.74 -0.9
528,987 - Atu5534 0.75 +0.0
529,018 - Atu5534 0.79 +0.2
529,043 - Atu5534 0.83 +1.5
529,098 - Atu5534 0.90 +1.1
529,098 - Atu5534 0.90 +0.5
529,117 + +0.2
529,125 - +0.4
529,156 - +0.6
529,204 - +1.1
529,204 - +0.5
529,228 + -0.1
529,228 + -0.0
529,228 + +0.3
529,236 - +0.9
529,236 - -0.0
529,236 - +0.4
529,301 + Atu5535 0.18 +0.7
529,301 + Atu5535 0.18 +0.0
529,309 + Atu5535 0.20 +0.4
529,364 - Atu5535 0.27 -0.2
529,397 + Atu5535 0.32 +0.3
529,401 + Atu5535 0.33 +0.3
529,416 + Atu5535 0.35 +0.1
529,421 + Atu5535 0.36 -0.4

Or see this region's nucleotide sequence