Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5520 and Atu5521 are separated by 26 nucleotides Atu5521 and Atu5522 are separated by 72 nucleotides
Atu5520: Atu5520 - acyl-CoA dehydrogenase, at 511,588 to 512,835
Atu5520
Atu5521: Atu5521 - ABC transporter nucleotide binding/ATPase (branched chain amino acid), at 512,862 to 513,641
Atu5521
Atu5522: Atu5522 - hypothetical protein, at 513,714 to 515,120
Atu5522
Position (kb) 512
513
514 Strain fitness (log2 ratio) -1
0
1
2 at 511.864 kb on - strand, within Atu5520 at 511.894 kb on - strand, within Atu5520 at 511.899 kb on - strand, within Atu5520 at 511.940 kb on + strand, within Atu5520 at 511.940 kb on + strand, within Atu5520 at 511.993 kb on - strand, within Atu5520 at 512.074 kb on - strand, within Atu5520 at 512.099 kb on + strand, within Atu5520 at 512.099 kb on + strand, within Atu5520 at 512.099 kb on + strand, within Atu5520 at 512.107 kb on - strand, within Atu5520 at 512.107 kb on - strand, within Atu5520 at 512.113 kb on - strand, within Atu5520 at 512.129 kb on + strand, within Atu5520 at 512.154 kb on + strand, within Atu5520 at 512.167 kb on + strand, within Atu5520 at 512.192 kb on - strand, within Atu5520 at 512.225 kb on - strand, within Atu5520 at 512.245 kb on - strand, within Atu5520 at 512.257 kb on + strand, within Atu5520 at 512.257 kb on + strand, within Atu5520 at 512.293 kb on + strand, within Atu5520 at 512.293 kb on + strand, within Atu5520 at 512.293 kb on + strand, within Atu5520 at 512.296 kb on - strand, within Atu5520 at 512.301 kb on - strand, within Atu5520 at 512.558 kb on + strand, within Atu5520 at 512.573 kb on + strand, within Atu5520 at 512.711 kb on + strand at 512.741 kb on + strand at 512.755 kb on - strand at 512.755 kb on - strand at 512.813 kb on + strand at 512.895 kb on - strand at 513.031 kb on + strand, within Atu5521 at 513.068 kb on - strand, within Atu5521 at 513.076 kb on - strand, within Atu5521 at 513.076 kb on - strand, within Atu5521 at 513.092 kb on + strand, within Atu5521 at 513.104 kb on + strand, within Atu5521 at 513.112 kb on - strand, within Atu5521 at 513.112 kb on - strand, within Atu5521 at 513.172 kb on + strand, within Atu5521 at 513.180 kb on - strand, within Atu5521 at 513.182 kb on + strand, within Atu5521 at 513.296 kb on + strand, within Atu5521 at 513.304 kb on - strand, within Atu5521 at 513.305 kb on - strand, within Atu5521 at 513.368 kb on + strand, within Atu5521 at 513.431 kb on + strand, within Atu5521 at 513.431 kb on + strand, within Atu5521 at 513.431 kb on + strand, within Atu5521 at 513.439 kb on - strand, within Atu5521 at 513.439 kb on - strand, within Atu5521 at 513.439 kb on - strand, within Atu5521 at 513.439 kb on - strand, within Atu5521 at 513.596 kb on - strand at 513.621 kb on - strand at 513.650 kb on + strand at 513.745 kb on - strand at 513.745 kb on - strand at 513.829 kb on + strand at 513.885 kb on + strand, within Atu5522 at 513.932 kb on - strand, within Atu5522 at 514.050 kb on - strand, within Atu5522 at 514.077 kb on - strand, within Atu5522 at 514.118 kb on + strand, within Atu5522 at 514.137 kb on - strand, within Atu5522 at 514.140 kb on + strand, within Atu5522 at 514.186 kb on + strand, within Atu5522 at 514.210 kb on + strand, within Atu5522 at 514.210 kb on + strand, within Atu5522 at 514.210 kb on + strand, within Atu5522 at 514.210 kb on + strand, within Atu5522 at 514.210 kb on + strand, within Atu5522 at 514.218 kb on - strand, within Atu5522 at 514.218 kb on - strand, within Atu5522 at 514.218 kb on - strand, within Atu5522 at 514.218 kb on - strand, within Atu5522 at 514.218 kb on - strand, within Atu5522 at 514.218 kb on - strand, within Atu5522 at 514.347 kb on + strand, within Atu5522 at 514.360 kb on - strand, within Atu5522 at 514.410 kb on + strand, within Atu5522 at 514.572 kb on + strand, within Atu5522
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 511,864 - Atu5520 0.22 +0.1 511,894 - Atu5520 0.25 +0.8 511,899 - Atu5520 0.25 -0.2 511,940 + Atu5520 0.28 +0.5 511,940 + Atu5520 0.28 -0.5 511,993 - Atu5520 0.32 +0.8 512,074 - Atu5520 0.39 -1.6 512,099 + Atu5520 0.41 -0.0 512,099 + Atu5520 0.41 +0.3 512,099 + Atu5520 0.41 -0.3 512,107 - Atu5520 0.42 +0.3 512,107 - Atu5520 0.42 -0.1 512,113 - Atu5520 0.42 +0.6 512,129 + Atu5520 0.43 +0.4 512,154 + Atu5520 0.45 -0.0 512,167 + Atu5520 0.46 -0.1 512,192 - Atu5520 0.48 -0.2 512,225 - Atu5520 0.51 -0.4 512,245 - Atu5520 0.53 -0.2 512,257 + Atu5520 0.54 -0.1 512,257 + Atu5520 0.54 -0.5 512,293 + Atu5520 0.56 -0.0 512,293 + Atu5520 0.56 -0.6 512,293 + Atu5520 0.56 -0.1 512,296 - Atu5520 0.57 -0.4 512,301 - Atu5520 0.57 +0.0 512,558 + Atu5520 0.78 -0.0 512,573 + Atu5520 0.79 -0.1 512,711 + +0.5 512,741 + +0.4 512,755 - -0.2 512,755 - -0.3 512,813 + +0.3 512,895 - +0.2 513,031 + Atu5521 0.22 +1.5 513,068 - Atu5521 0.26 +0.6 513,076 - Atu5521 0.27 -0.0 513,076 - Atu5521 0.27 +0.6 513,092 + Atu5521 0.29 +0.4 513,104 + Atu5521 0.31 +0.2 513,112 - Atu5521 0.32 +0.0 513,112 - Atu5521 0.32 -0.3 513,172 + Atu5521 0.40 -0.2 513,180 - Atu5521 0.41 +0.2 513,182 + Atu5521 0.41 +0.7 513,296 + Atu5521 0.56 -0.1 513,304 - Atu5521 0.57 -0.2 513,305 - Atu5521 0.57 +1.8 513,368 + Atu5521 0.65 -0.0 513,431 + Atu5521 0.73 -0.1 513,431 + Atu5521 0.73 -0.2 513,431 + Atu5521 0.73 +0.5 513,439 - Atu5521 0.74 +0.4 513,439 - Atu5521 0.74 +0.6 513,439 - Atu5521 0.74 +0.4 513,439 - Atu5521 0.74 +0.4 513,596 - +0.5 513,621 - +0.0 513,650 + +0.0 513,745 - +0.0 513,745 - -0.1 513,829 + -0.0 513,885 + Atu5522 0.12 +0.1 513,932 - Atu5522 0.15 +0.0 514,050 - Atu5522 0.24 +0.2 514,077 - Atu5522 0.26 +0.6 514,118 + Atu5522 0.29 +0.1 514,137 - Atu5522 0.30 -0.5 514,140 + Atu5522 0.30 +0.0 514,186 + Atu5522 0.34 -1.1 514,210 + Atu5522 0.35 -0.0 514,210 + Atu5522 0.35 +1.0 514,210 + Atu5522 0.35 +0.6 514,210 + Atu5522 0.35 -0.2 514,210 + Atu5522 0.35 -0.0 514,218 - Atu5522 0.36 +0.6 514,218 - Atu5522 0.36 -0.5 514,218 - Atu5522 0.36 +0.7 514,218 - Atu5522 0.36 +0.3 514,218 - Atu5522 0.36 +0.1 514,218 - Atu5522 0.36 -0.3 514,347 + Atu5522 0.45 -0.0 514,360 - Atu5522 0.46 -0.3 514,410 + Atu5522 0.49 -0.1 514,572 + Atu5522 0.61 +0.1
Or see this region's nucleotide sequence