Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5439 and Atu8060 are separated by 246 nucleotides Atu8060 and Atu5440 are separated by 28 nucleotides Atu5440 and Atu5441 are separated by 266 nucleotides Atu5441 and Atu5442 are separated by 177 nucleotides
Atu5439: Atu5439 - hypothetical protein, at 432,238 to 432,804
Atu5439
Atu8060: Atu8060 - hypothetical protein, at 433,051 to 433,362
Atu8060
Atu5440: Atu5440 - hypothetical protein, at 433,391 to 433,621
Atu5440
Atu5441: Atu5441 - ABC transporter substrate binding protein, at 433,888 to 434,406
Atu5441
Atu5442: Atu5442 - methyl-accepting chemotaxis protein, at 434,584 to 436,524
Atu5442
Position (kb) 433
434 Strain fitness (log2 ratio) -2
-1
0
1
2 at 432.404 kb on + strand, within Atu5439 at 432.498 kb on - strand, within Atu5439 at 432.614 kb on - strand, within Atu5439 at 432.661 kb on + strand, within Atu5439 at 432.683 kb on + strand, within Atu5439 at 432.702 kb on - strand, within Atu5439 at 432.714 kb on - strand, within Atu5439 at 432.732 kb on - strand, within Atu5439 at 432.757 kb on + strand at 432.757 kb on - strand at 432.759 kb on + strand at 432.759 kb on + strand at 432.847 kb on - strand at 432.858 kb on + strand at 432.914 kb on + strand at 432.926 kb on + strand at 432.928 kb on - strand at 432.999 kb on - strand at 433.022 kb on + strand at 433.154 kb on + strand, within Atu8060 at 433.154 kb on + strand, within Atu8060 at 433.162 kb on - strand, within Atu8060 at 433.162 kb on - strand, within Atu8060 at 433.167 kb on - strand, within Atu8060 at 433.170 kb on + strand, within Atu8060 at 433.176 kb on + strand, within Atu8060 at 433.181 kb on + strand, within Atu8060 at 433.204 kb on - strand, within Atu8060 at 433.248 kb on + strand, within Atu8060 at 433.248 kb on + strand, within Atu8060 at 433.248 kb on + strand, within Atu8060 at 433.256 kb on - strand, within Atu8060 at 433.256 kb on - strand, within Atu8060 at 433.256 kb on - strand, within Atu8060 at 433.256 kb on - strand, within Atu8060 at 433.263 kb on + strand, within Atu8060 at 433.263 kb on + strand, within Atu8060 at 433.320 kb on + strand, within Atu8060 at 433.377 kb on - strand at 433.397 kb on - strand at 433.402 kb on + strand at 433.410 kb on - strand at 433.425 kb on + strand, within Atu5440 at 433.443 kb on - strand, within Atu5440 at 433.444 kb on + strand, within Atu5440 at 433.507 kb on + strand, within Atu5440 at 433.515 kb on - strand, within Atu5440 at 433.515 kb on - strand, within Atu5440 at 433.520 kb on - strand, within Atu5440 at 433.538 kb on + strand, within Atu5440 at 433.539 kb on - strand, within Atu5440 at 433.539 kb on - strand, within Atu5440 at 433.571 kb on - strand, within Atu5440 at 433.594 kb on - strand, within Atu5440 at 433.667 kb on - strand at 433.749 kb on - strand at 433.806 kb on + strand at 433.806 kb on - strand at 433.863 kb on - strand at 433.885 kb on - strand at 433.886 kb on + strand at 433.934 kb on + strand at 433.934 kb on + strand at 433.942 kb on - strand, within Atu5441 at 433.982 kb on - strand, within Atu5441 at 434.023 kb on + strand, within Atu5441 at 434.023 kb on + strand, within Atu5441 at 434.025 kb on + strand, within Atu5441 at 434.031 kb on - strand, within Atu5441 at 434.031 kb on - strand, within Atu5441 at 434.111 kb on - strand, within Atu5441 at 434.131 kb on + strand, within Atu5441 at 434.139 kb on - strand, within Atu5441 at 434.161 kb on + strand, within Atu5441 at 434.184 kb on + strand, within Atu5441 at 434.192 kb on - strand, within Atu5441 at 434.230 kb on + strand, within Atu5441 at 434.273 kb on + strand, within Atu5441 at 434.313 kb on - strand, within Atu5441 at 434.407 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 432,404 + Atu5439 0.29 +0.3 432,498 - Atu5439 0.46 -0.3 432,614 - Atu5439 0.66 -0.8 432,661 + Atu5439 0.75 +0.7 432,683 + Atu5439 0.78 +0.1 432,702 - Atu5439 0.82 +0.3 432,714 - Atu5439 0.84 +0.6 432,732 - Atu5439 0.87 +0.4 432,757 + +0.2 432,757 - -0.1 432,759 + -0.2 432,759 + -0.1 432,847 - +0.4 432,858 + +0.1 432,914 + -0.1 432,926 + -0.1 432,928 - +0.3 432,999 - +0.1 433,022 + -0.6 433,154 + Atu8060 0.33 +0.0 433,154 + Atu8060 0.33 +0.0 433,162 - Atu8060 0.36 +2.5 433,162 - Atu8060 0.36 +0.5 433,167 - Atu8060 0.37 -0.1 433,170 + Atu8060 0.38 -0.2 433,176 + Atu8060 0.40 -0.0 433,181 + Atu8060 0.42 -0.6 433,204 - Atu8060 0.49 +0.1 433,248 + Atu8060 0.63 -1.2 433,248 + Atu8060 0.63 -0.2 433,248 + Atu8060 0.63 -0.1 433,256 - Atu8060 0.66 -0.5 433,256 - Atu8060 0.66 -0.3 433,256 - Atu8060 0.66 +1.0 433,256 - Atu8060 0.66 -0.2 433,263 + Atu8060 0.68 +0.2 433,263 + Atu8060 0.68 +0.0 433,320 + Atu8060 0.86 -0.0 433,377 - +0.3 433,397 - -0.3 433,402 + +0.5 433,410 - +0.5 433,425 + Atu5440 0.15 +0.1 433,443 - Atu5440 0.23 +0.2 433,444 + Atu5440 0.23 +1.8 433,507 + Atu5440 0.50 +0.7 433,515 - Atu5440 0.54 -0.5 433,515 - Atu5440 0.54 +0.0 433,520 - Atu5440 0.56 -0.3 433,538 + Atu5440 0.64 -1.0 433,539 - Atu5440 0.64 +0.1 433,539 - Atu5440 0.64 +0.7 433,571 - Atu5440 0.78 +1.9 433,594 - Atu5440 0.88 +0.6 433,667 - -1.9 433,749 - +0.3 433,806 + +0.7 433,806 - +0.2 433,863 - +0.4 433,885 - +0.6 433,886 + +0.3 433,934 + +0.2 433,934 + +0.7 433,942 - Atu5441 0.10 +0.0 433,982 - Atu5441 0.18 -0.1 434,023 + Atu5441 0.26 +0.1 434,023 + Atu5441 0.26 -0.6 434,025 + Atu5441 0.26 -0.1 434,031 - Atu5441 0.28 -0.4 434,031 - Atu5441 0.28 +1.5 434,111 - Atu5441 0.43 +0.4 434,131 + Atu5441 0.47 +0.7 434,139 - Atu5441 0.48 -0.3 434,161 + Atu5441 0.53 +0.1 434,184 + Atu5441 0.57 -0.5 434,192 - Atu5441 0.59 +0.3 434,230 + Atu5441 0.66 +0.4 434,273 + Atu5441 0.74 +0.0 434,313 - Atu5441 0.82 +0.6 434,407 - -0.4
Or see this region's nucleotide sequence