Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3327 and Atu8030 are separated by 421 nucleotides Atu8030 and Atu3328 are separated by 15 nucleotides Atu3328 and Atu3329 are separated by 146 nucleotides
Atu3327: Atu3327 - succinoglycan exopolysaccharide synthesis protein, at 361,096 to 361,776
Atu3327
Atu8030: Atu8030 - hypothetical protein, at 362,198 to 362,380
Atu8030
Atu3328: Atu3328 - aldehyde dehydrogenase, at 362,396 to 362,944
Atu3328
Atu3329: Atu3329 - beta alanine--pyruvate transaminase, at 363,091 to 364,425
Atu3329
Position (kb) 362
363 Strain fitness (log2 ratio) -1
0
1
2
3 at 361.414 kb on - strand, within Atu3327 at 361.664 kb on - strand, within Atu3327 at 361.811 kb on + strand at 361.906 kb on - strand at 361.999 kb on + strand at 362.055 kb on + strand at 362.370 kb on + strand at 362.423 kb on + strand at 362.678 kb on + strand, within Atu3328 at 362.715 kb on - strand, within Atu3328 at 362.715 kb on - strand, within Atu3328 at 362.725 kb on - strand, within Atu3328 at 362.725 kb on - strand, within Atu3328 at 362.725 kb on - strand, within Atu3328 at 362.860 kb on + strand, within Atu3328 at 362.868 kb on - strand, within Atu3328 at 362.880 kb on - strand, within Atu3328 at 362.945 kb on + strand at 362.945 kb on + strand at 362.953 kb on - strand at 362.953 kb on - strand at 362.983 kb on + strand at 363.034 kb on + strand at 363.088 kb on + strand at 363.162 kb on + strand at 363.162 kb on + strand at 363.165 kb on - strand at 363.170 kb on - strand at 363.232 kb on + strand, within Atu3329 at 363.240 kb on - strand, within Atu3329 at 363.313 kb on - strand, within Atu3329 at 363.319 kb on + strand, within Atu3329 at 363.327 kb on - strand, within Atu3329 at 363.401 kb on + strand, within Atu3329 at 363.454 kb on - strand, within Atu3329 at 363.474 kb on - strand, within Atu3329 at 363.497 kb on + strand, within Atu3329 at 363.684 kb on - strand, within Atu3329 at 363.686 kb on + strand, within Atu3329 at 363.711 kb on - strand, within Atu3329 at 363.801 kb on + strand, within Atu3329 at 363.847 kb on + strand, within Atu3329 at 363.943 kb on + strand, within Atu3329
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 361,414 - Atu3327 0.47 +0.8 361,664 - Atu3327 0.83 +0.1 361,811 + -0.5 361,906 - -0.5 361,999 + +0.2 362,055 + +0.2 362,370 + -0.5 362,423 + +0.3 362,678 + Atu3328 0.51 +1.0 362,715 - Atu3328 0.58 +0.2 362,715 - Atu3328 0.58 +0.5 362,725 - Atu3328 0.60 +0.4 362,725 - Atu3328 0.60 +0.1 362,725 - Atu3328 0.60 +0.3 362,860 + Atu3328 0.85 +0.4 362,868 - Atu3328 0.86 -0.9 362,880 - Atu3328 0.88 +0.4 362,945 + -0.5 362,945 + +0.9 362,953 - +0.2 362,953 - +0.6 362,983 + +2.9 363,034 + +0.0 363,088 + -0.0 363,162 + +0.5 363,162 + -0.1 363,165 - +0.2 363,170 - +0.4 363,232 + Atu3329 0.11 +0.3 363,240 - Atu3329 0.11 +0.3 363,313 - Atu3329 0.17 -0.3 363,319 + Atu3329 0.17 +0.9 363,327 - Atu3329 0.18 +0.3 363,401 + Atu3329 0.23 +0.5 363,454 - Atu3329 0.27 +0.4 363,474 - Atu3329 0.29 +0.1 363,497 + Atu3329 0.30 +0.8 363,684 - Atu3329 0.44 +1.2 363,686 + Atu3329 0.45 -0.1 363,711 - Atu3329 0.46 +0.3 363,801 + Atu3329 0.53 +0.7 363,847 + Atu3329 0.57 +0.4 363,943 + Atu3329 0.64 +0.4
Or see this region's nucleotide sequence