Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3087 and Atu3088 are separated by 237 nucleotides Atu3088 and Atu3089 are separated by 30 nucleotides
Atu3087: Atu3087 - spermidine/putrescine ABC transporter permease, at 92,416 to 93,327
Atu3087
Atu3088: Atu3088 - spermidine/putrescine ABC transporter substrate-binding protein, at 93,565 to 94,854
Atu3088
Atu3089: Atu3089 - spermidine/putrescine ABC transporter ATPase, at 94,885 to 95,970
Atu3089
Position (kb) 93
94
95 Strain fitness (log2 ratio) -1
0
1
2 at 92.581 kb on - strand, within Atu3087 at 92.598 kb on - strand, within Atu3087 at 92.676 kb on + strand, within Atu3087 at 92.762 kb on + strand, within Atu3087 at 92.762 kb on + strand, within Atu3087 at 92.770 kb on - strand, within Atu3087 at 92.774 kb on + strand, within Atu3087 at 92.791 kb on + strand, within Atu3087 at 92.799 kb on - strand, within Atu3087 at 92.813 kb on + strand, within Atu3087 at 92.867 kb on + strand, within Atu3087 at 92.875 kb on - strand, within Atu3087 at 92.953 kb on - strand, within Atu3087 at 92.964 kb on - strand, within Atu3087 at 93.020 kb on + strand, within Atu3087 at 93.020 kb on + strand, within Atu3087 at 93.020 kb on + strand, within Atu3087 at 93.020 kb on + strand, within Atu3087 at 93.020 kb on + strand, within Atu3087 at 93.020 kb on + strand, within Atu3087 at 93.020 kb on + strand, within Atu3087 at 93.028 kb on - strand, within Atu3087 at 93.083 kb on - strand, within Atu3087 at 93.090 kb on + strand, within Atu3087 at 93.090 kb on + strand, within Atu3087 at 93.115 kb on + strand, within Atu3087 at 93.139 kb on + strand, within Atu3087 at 93.244 kb on + strand at 93.272 kb on - strand at 93.312 kb on + strand at 93.312 kb on + strand at 93.332 kb on - strand at 93.376 kb on + strand at 93.444 kb on - strand at 93.484 kb on - strand at 93.500 kb on + strand at 93.508 kb on - strand at 93.516 kb on - strand at 93.599 kb on + strand at 93.662 kb on - strand at 93.737 kb on - strand, within Atu3088 at 93.742 kb on - strand, within Atu3088 at 93.757 kb on - strand, within Atu3088 at 93.790 kb on + strand, within Atu3088 at 93.848 kb on - strand, within Atu3088 at 93.875 kb on + strand, within Atu3088 at 93.898 kb on - strand, within Atu3088 at 93.909 kb on + strand, within Atu3088 at 93.910 kb on + strand, within Atu3088 at 93.917 kb on - strand, within Atu3088 at 93.918 kb on - strand, within Atu3088 at 93.931 kb on + strand, within Atu3088 at 94.071 kb on - strand, within Atu3088 at 94.081 kb on - strand, within Atu3088 at 94.097 kb on + strand, within Atu3088 at 94.296 kb on + strand, within Atu3088 at 94.342 kb on - strand, within Atu3088 at 94.431 kb on - strand, within Atu3088 at 94.498 kb on - strand, within Atu3088 at 94.532 kb on - strand, within Atu3088 at 94.540 kb on - strand, within Atu3088 at 94.658 kb on + strand, within Atu3088 at 94.666 kb on - strand, within Atu3088 at 94.756 kb on + strand at 94.761 kb on + strand at 94.769 kb on - strand at 94.769 kb on - strand at 94.832 kb on - strand at 95.126 kb on - strand, within Atu3089 at 95.155 kb on - strand, within Atu3089 at 95.378 kb on + strand, within Atu3089 at 95.384 kb on - strand, within Atu3089 at 95.431 kb on + strand, within Atu3089 at 95.475 kb on - strand, within Atu3089 at 95.497 kb on - strand, within Atu3089 at 95.577 kb on + strand, within Atu3089 at 95.629 kb on - strand, within Atu3089 at 95.676 kb on - strand, within Atu3089 at 95.722 kb on + strand, within Atu3089 at 95.766 kb on + strand, within Atu3089 at 95.818 kb on + strand, within Atu3089
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 92,581 - Atu3087 0.18 +0.6 92,598 - Atu3087 0.20 -0.2 92,676 + Atu3087 0.29 +0.2 92,762 + Atu3087 0.38 +0.0 92,762 + Atu3087 0.38 -0.3 92,770 - Atu3087 0.39 +0.6 92,774 + Atu3087 0.39 +0.2 92,791 + Atu3087 0.41 +0.1 92,799 - Atu3087 0.42 +0.0 92,813 + Atu3087 0.44 +0.3 92,867 + Atu3087 0.49 -0.7 92,875 - Atu3087 0.50 -0.0 92,953 - Atu3087 0.59 +0.2 92,964 - Atu3087 0.60 +0.6 93,020 + Atu3087 0.66 +0.0 93,020 + Atu3087 0.66 -0.1 93,020 + Atu3087 0.66 -0.0 93,020 + Atu3087 0.66 -0.2 93,020 + Atu3087 0.66 -0.6 93,020 + Atu3087 0.66 +0.9 93,020 + Atu3087 0.66 -1.1 93,028 - Atu3087 0.67 -1.7 93,083 - Atu3087 0.73 +1.4 93,090 + Atu3087 0.74 -1.1 93,090 + Atu3087 0.74 -0.1 93,115 + Atu3087 0.77 -0.0 93,139 + Atu3087 0.79 +0.4 93,244 + +1.0 93,272 - +0.0 93,312 + +0.1 93,312 + -0.3 93,332 - +0.2 93,376 + +0.1 93,444 - -0.1 93,484 - +0.3 93,500 + -1.1 93,508 - -0.2 93,516 - -1.1 93,599 + +0.0 93,662 - +0.4 93,737 - Atu3088 0.13 +1.0 93,742 - Atu3088 0.14 +0.6 93,757 - Atu3088 0.15 +0.5 93,790 + Atu3088 0.17 +0.4 93,848 - Atu3088 0.22 +0.1 93,875 + Atu3088 0.24 -0.0 93,898 - Atu3088 0.26 +0.7 93,909 + Atu3088 0.27 -0.1 93,910 + Atu3088 0.27 +0.5 93,917 - Atu3088 0.27 -0.5 93,918 - Atu3088 0.27 -0.1 93,931 + Atu3088 0.28 +0.1 94,071 - Atu3088 0.39 -0.1 94,081 - Atu3088 0.40 +0.6 94,097 + Atu3088 0.41 +0.2 94,296 + Atu3088 0.57 +1.0 94,342 - Atu3088 0.60 -0.0 94,431 - Atu3088 0.67 +0.3 94,498 - Atu3088 0.72 -0.1 94,532 - Atu3088 0.75 +0.1 94,540 - Atu3088 0.76 +1.6 94,658 + Atu3088 0.85 +0.4 94,666 - Atu3088 0.85 -0.1 94,756 + +0.2 94,761 + -0.2 94,769 - +0.3 94,769 - -0.6 94,832 - -0.1 95,126 - Atu3089 0.22 +0.2 95,155 - Atu3089 0.25 -0.4 95,378 + Atu3089 0.45 +1.2 95,384 - Atu3089 0.46 -0.6 95,431 + Atu3089 0.50 +0.3 95,475 - Atu3089 0.54 -0.9 95,497 - Atu3089 0.56 -0.3 95,577 + Atu3089 0.64 +0.3 95,629 - Atu3089 0.69 -0.0 95,676 - Atu3089 0.73 -0.4 95,722 + Atu3089 0.77 +1.3 95,766 + Atu3089 0.81 +0.1 95,818 + Atu3089 0.86 +2.0
Or see this region's nucleotide sequence