Strain Fitness in Agrobacterium fabrum C58 around Atu4187

Experiment: 4-Hydroxybenzoic Acid (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAtu4184 and Atu4185 are separated by 259 nucleotidesAtu4185 and Atu4186 are separated by 72 nucleotidesAtu4186 and Atu4187 are separated by 239 nucleotidesAtu4187 and Atu4189 are separated by 324 nucleotides Atu4184: Atu4184 - 23S ribosomal RNA, at 1,307,206 to 1,309,440 Atu4184 Atu4185: Atu4185 - hypothetical protein, at 1,309,700 to 1,309,999 Atu4185 Atu4186: Atu4186 - 5S ribosomal RNA, at 1,310,072 to 1,310,190 Atu4186 Atu4187: Atu4187 - tRNA-Met, at 1,310,430 to 1,310,506 Atu4187 Atu4189: Atu4189 - dihydropicolinate synthase, at 1,310,831 to 1,311,727 Atu4189 Position (kb) 1310 1311Strain fitness (log2 ratio) -1 0 1at 1310.335 kb on - strandat 1310.469 kb on + strand, within Atu4187at 1311.087 kb on + strand, within Atu4189at 1311.095 kb on - strand, within Atu4189at 1311.167 kb on + strand, within Atu4189at 1311.261 kb on + strand, within Atu4189at 1311.304 kb on + strand, within Atu4189at 1311.340 kb on - strand, within Atu4189at 1311.340 kb on - strand, within Atu4189at 1311.490 kb on + strand, within Atu4189at 1311.498 kb on - strand, within Atu4189

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C)
remove
1,310,335 - -1.0
1,310,469 + Atu4187 0.51 +0.5
1,311,087 + Atu4189 0.29 +0.6
1,311,095 - Atu4189 0.29 -1.0
1,311,167 + Atu4189 0.37 -0.5
1,311,261 + Atu4189 0.48 +1.6
1,311,304 + Atu4189 0.53 -0.1
1,311,340 - Atu4189 0.57 -0.0
1,311,340 - Atu4189 0.57 +0.1
1,311,490 + Atu4189 0.73 +0.2
1,311,498 - Atu4189 0.74 -0.1

Or see this region's nucleotide sequence