Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0905 and Atu0906 are separated by 225 nucleotides Atu0906 and Atu0907 are separated by 102 nucleotides Atu0907 and Atu0908 are separated by 86 nucleotides Atu0908 and Atu0909 are separated by 201 nucleotides
Atu0905: Atu0905 - dnaK suppressor protein, at 896,410 to 896,730
Atu0905
Atu0906: Atu0906 - Hemolysin III, at 896,956 to 897,624
Atu0906
Atu0907: Atu0907 - Phosphinothricin acetyltransferase, at 897,727 to 898,224
Atu0907
Atu0908: Atu0908 - transcriptional regulator, at 898,311 to 898,718
Atu0908
Atu0909: Atu0909 - Na+/H+ antiporter, at 898,920 to 901,289
Atu0909
Position (kb) 897
898
899 Strain fitness (log2 ratio) -2
-1
0
1 at 896.811 kb on - strand at 896.894 kb on + strand at 896.902 kb on - strand at 896.902 kb on - strand at 896.954 kb on - strand at 897.082 kb on + strand, within Atu0906 at 897.117 kb on + strand, within Atu0906 at 897.117 kb on + strand, within Atu0906 at 897.245 kb on + strand, within Atu0906 at 897.245 kb on + strand, within Atu0906 at 897.245 kb on + strand, within Atu0906 at 897.277 kb on - strand, within Atu0906 at 897.298 kb on - strand, within Atu0906 at 897.306 kb on + strand, within Atu0906 at 897.367 kb on - strand, within Atu0906 at 897.415 kb on - strand, within Atu0906 at 897.425 kb on - strand, within Atu0906 at 897.426 kb on - strand, within Atu0906 at 897.480 kb on + strand, within Atu0906 at 897.525 kb on - strand, within Atu0906 at 897.638 kb on + strand at 897.695 kb on - strand at 897.723 kb on - strand at 897.723 kb on - strand at 897.773 kb on - strand at 897.801 kb on + strand, within Atu0907 at 897.914 kb on + strand, within Atu0907 at 897.958 kb on - strand, within Atu0907 at 897.964 kb on + strand, within Atu0907 at 898.108 kb on + strand, within Atu0907 at 898.130 kb on - strand, within Atu0907 at 898.202 kb on + strand at 898.202 kb on + strand at 898.202 kb on + strand at 898.210 kb on - strand at 898.217 kb on - strand at 898.227 kb on + strand at 898.249 kb on + strand at 898.326 kb on - strand at 898.429 kb on - strand, within Atu0908 at 898.468 kb on - strand, within Atu0908 at 898.569 kb on - strand, within Atu0908 at 898.669 kb on + strand, within Atu0908 at 898.693 kb on + strand at 898.694 kb on - strand at 898.720 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 896,811 - -0.4 896,894 + +1.6 896,902 - -0.2 896,902 - -0.2 896,954 - -0.1 897,082 + Atu0906 0.19 -0.7 897,117 + Atu0906 0.24 +0.0 897,117 + Atu0906 0.24 +0.5 897,245 + Atu0906 0.43 -0.2 897,245 + Atu0906 0.43 -0.4 897,245 + Atu0906 0.43 +0.9 897,277 - Atu0906 0.48 -0.5 897,298 - Atu0906 0.51 -0.5 897,306 + Atu0906 0.52 +0.2 897,367 - Atu0906 0.61 -1.0 897,415 - Atu0906 0.69 +0.9 897,425 - Atu0906 0.70 -0.4 897,426 - Atu0906 0.70 -0.5 897,480 + Atu0906 0.78 -0.1 897,525 - Atu0906 0.85 +0.6 897,638 + -0.6 897,695 - -0.4 897,723 - -0.8 897,723 - +0.0 897,773 - +0.0 897,801 + Atu0907 0.15 +0.1 897,914 + Atu0907 0.38 -0.1 897,958 - Atu0907 0.46 -1.0 897,964 + Atu0907 0.48 +1.3 898,108 + Atu0907 0.77 +0.1 898,130 - Atu0907 0.81 +1.3 898,202 + -0.3 898,202 + +0.8 898,202 + +0.1 898,210 - -2.5 898,217 - +0.1 898,227 + +0.6 898,249 + +0.1 898,326 - -0.3 898,429 - Atu0908 0.29 +0.0 898,468 - Atu0908 0.38 -0.4 898,569 - Atu0908 0.63 -0.0 898,669 + Atu0908 0.88 -0.5 898,693 + -0.3 898,694 - -0.6 898,720 + -0.1
Or see this region's nucleotide sequence