Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0249 and Atu0250 are separated by 127 nucleotides Atu0250 and Atu0251 are separated by 206 nucleotides Atu0251 and Atu0252 are separated by 64 nucleotides Atu0252 and Atu0253 are separated by 218 nucleotides
Atu0249: Atu0249 - ABC transporter, substrate binding protein (sugar), at 247,424 to 248,527
Atu0249
Atu0250: Atu0250 - hypothetical protein, at 248,655 to 249,062
Atu0250
Atu0251: Atu0251 - hypothetical protein, at 249,269 to 250,252
Atu0251
Atu0252: Atu0252 - hypothetical protein, at 250,317 to 250,832
Atu0252
Atu0253: Atu0253 - hypothetical protein, at 251,051 to 251,839
Atu0253
Position (kb) 249
250
251 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 248.363 kb on + strand, within Atu0249 at 248.371 kb on - strand, within Atu0249 at 248.405 kb on + strand, within Atu0249 at 248.607 kb on - strand at 248.653 kb on + strand at 248.661 kb on - strand at 248.898 kb on + strand, within Atu0250 at 248.916 kb on - strand, within Atu0250 at 248.916 kb on - strand, within Atu0250 at 248.916 kb on - strand, within Atu0250 at 248.918 kb on + strand, within Atu0250 at 248.936 kb on + strand, within Atu0250 at 248.965 kb on - strand, within Atu0250 at 248.982 kb on - strand, within Atu0250 at 249.051 kb on + strand at 249.058 kb on + strand at 249.353 kb on + strand at 249.389 kb on + strand, within Atu0251 at 249.408 kb on + strand, within Atu0251 at 249.462 kb on + strand, within Atu0251 at 249.522 kb on + strand, within Atu0251 at 249.609 kb on - strand, within Atu0251 at 249.657 kb on + strand, within Atu0251 at 249.687 kb on - strand, within Atu0251 at 249.694 kb on + strand, within Atu0251 at 249.755 kb on - strand, within Atu0251 at 249.776 kb on - strand, within Atu0251 at 249.778 kb on - strand, within Atu0251 at 249.800 kb on + strand, within Atu0251 at 249.808 kb on - strand, within Atu0251 at 249.808 kb on - strand, within Atu0251 at 249.843 kb on + strand, within Atu0251 at 249.856 kb on - strand, within Atu0251 at 249.880 kb on + strand, within Atu0251 at 249.895 kb on - strand, within Atu0251 at 249.968 kb on + strand, within Atu0251 at 249.969 kb on + strand, within Atu0251 at 250.020 kb on - strand, within Atu0251 at 250.040 kb on + strand, within Atu0251 at 250.066 kb on + strand, within Atu0251 at 250.074 kb on - strand, within Atu0251 at 250.074 kb on - strand, within Atu0251 at 250.074 kb on - strand, within Atu0251 at 250.074 kb on - strand, within Atu0251 at 250.074 kb on - strand, within Atu0251 at 250.148 kb on + strand, within Atu0251 at 250.196 kb on - strand at 250.198 kb on + strand at 250.199 kb on + strand at 250.199 kb on + strand at 250.332 kb on + strand at 250.340 kb on - strand at 250.404 kb on + strand, within Atu0252 at 250.420 kb on + strand, within Atu0252 at 250.420 kb on + strand, within Atu0252 at 250.428 kb on - strand, within Atu0252 at 250.428 kb on - strand, within Atu0252 at 250.510 kb on + strand, within Atu0252 at 250.518 kb on - strand, within Atu0252 at 250.621 kb on + strand, within Atu0252 at 250.739 kb on + strand, within Atu0252 at 250.739 kb on + strand, within Atu0252 at 250.756 kb on + strand, within Atu0252 at 250.775 kb on + strand, within Atu0252 at 250.873 kb on + strand at 251.016 kb on - strand at 251.162 kb on - strand, within Atu0253 at 251.252 kb on - strand, within Atu0253
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 248,363 + Atu0249 0.85 -1.2 248,371 - Atu0249 0.86 +0.6 248,405 + Atu0249 0.89 -1.2 248,607 - +3.1 248,653 + +0.7 248,661 - +0.0 248,898 + Atu0250 0.60 -0.3 248,916 - Atu0250 0.64 +0.0 248,916 - Atu0250 0.64 -0.3 248,916 - Atu0250 0.64 -0.4 248,918 + Atu0250 0.64 -1.2 248,936 + Atu0250 0.69 +0.6 248,965 - Atu0250 0.76 -0.2 248,982 - Atu0250 0.80 -0.7 249,051 + -1.0 249,058 + -2.2 249,353 + +0.5 249,389 + Atu0251 0.12 +0.7 249,408 + Atu0251 0.14 +0.7 249,462 + Atu0251 0.20 +0.6 249,522 + Atu0251 0.26 +0.3 249,609 - Atu0251 0.35 +1.4 249,657 + Atu0251 0.39 -0.5 249,687 - Atu0251 0.42 +0.3 249,694 + Atu0251 0.43 +1.1 249,755 - Atu0251 0.49 +0.3 249,776 - Atu0251 0.52 -1.2 249,778 - Atu0251 0.52 +1.0 249,800 + Atu0251 0.54 -0.5 249,808 - Atu0251 0.55 +0.8 249,808 - Atu0251 0.55 +0.6 249,843 + Atu0251 0.58 +1.0 249,856 - Atu0251 0.60 +0.9 249,880 + Atu0251 0.62 +0.2 249,895 - Atu0251 0.64 +0.5 249,968 + Atu0251 0.71 -0.7 249,969 + Atu0251 0.71 +0.7 250,020 - Atu0251 0.76 +0.6 250,040 + Atu0251 0.78 -0.7 250,066 + Atu0251 0.81 +0.9 250,074 - Atu0251 0.82 +0.6 250,074 - Atu0251 0.82 -0.3 250,074 - Atu0251 0.82 +0.6 250,074 - Atu0251 0.82 +0.2 250,074 - Atu0251 0.82 +0.4 250,148 + Atu0251 0.89 +0.9 250,196 - +0.9 250,198 + +2.8 250,199 + -0.2 250,199 + -0.0 250,332 + -0.3 250,340 - +1.8 250,404 + Atu0252 0.17 +1.8 250,420 + Atu0252 0.20 -1.0 250,420 + Atu0252 0.20 -0.5 250,428 - Atu0252 0.22 -0.2 250,428 - Atu0252 0.22 +1.6 250,510 + Atu0252 0.37 +0.4 250,518 - Atu0252 0.39 +0.4 250,621 + Atu0252 0.59 -0.3 250,739 + Atu0252 0.82 -0.1 250,739 + Atu0252 0.82 -0.0 250,756 + Atu0252 0.85 -0.0 250,775 + Atu0252 0.89 +0.2 250,873 + -1.9 251,016 - -0.4 251,162 - Atu0253 0.14 +0.8 251,252 - Atu0253 0.25 +0.5
Or see this region's nucleotide sequence