Strain Fitness in Escherichia coli BW25113 around b2634

Experiment: LB Aerobic with Sulfamonomethoxine 0.000125 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyfjQ and yfjR are separated by 216 nucleotidesyfjR and ypjK are separated by 40 nucleotidesypjK and b2636 overlap by 1 nucleotidesb2636 and yfjT are separated by 23 nucleotides b2633: yfjQ - CP4-57 prophage; predicted protein (NCBI), at 2,766,687 to 2,767,508 yfjQ b2634: yfjR - CP4-57 prophage; predicted DNA-binding transcriptional regulator (NCBI), at 2,767,725 to 2,768,426 yfjR b2635: ypjK - CP4-57 prophage; predicted inner membrane protein (NCBI), at 2,768,467 to 2,768,703 ypjK b2636: b2636 - orf, hypothetical protein (VIMSS), at 2,768,703 to 2,769,146 b2636 b2637: yfjT - CP4-57 prophage; predicted protein (NCBI), at 2,769,170 to 2,769,637 yfjT Position (kb) 2767 2768 2769Strain fitness (log2 ratio) -2 -1 0 1at 2766.741 kb on + strandat 2766.779 kb on - strand, within yfjQat 2766.816 kb on + strand, within yfjQat 2766.905 kb on - strand, within yfjQat 2767.046 kb on - strand, within yfjQat 2767.051 kb on - strand, within yfjQat 2767.051 kb on - strand, within yfjQat 2767.051 kb on - strand, within yfjQat 2767.055 kb on + strand, within yfjQat 2767.134 kb on - strand, within yfjQat 2767.150 kb on - strand, within yfjQat 2767.229 kb on - strand, within yfjQat 2767.328 kb on - strand, within yfjQat 2767.342 kb on - strand, within yfjQat 2767.342 kb on - strand, within yfjQat 2767.420 kb on + strand, within yfjQat 2767.519 kb on + strandat 2767.563 kb on + strandat 2767.605 kb on + strandat 2767.649 kb on + strandat 2767.658 kb on - strandat 2767.904 kb on + strand, within yfjRat 2768.029 kb on - strand, within yfjRat 2768.215 kb on + strand, within yfjRat 2768.258 kb on - strand, within yfjRat 2768.258 kb on - strand, within yfjRat 2768.388 kb on - strandat 2768.429 kb on - strandat 2768.429 kb on - strandat 2768.437 kb on + strandat 2768.445 kb on - strandat 2768.460 kb on - strandat 2768.470 kb on - strandat 2768.582 kb on - strand, within ypjKat 2768.582 kb on - strand, within ypjKat 2768.582 kb on - strand, within ypjKat 2768.791 kb on - strand, within b2636at 2768.810 kb on + strand, within b2636at 2768.843 kb on - strand, within b2636at 2768.845 kb on - strand, within b2636at 2768.919 kb on - strand, within b2636at 2768.941 kb on - strand, within b2636at 2768.941 kb on - strand, within b2636at 2769.051 kb on - strand, within b2636at 2769.064 kb on - strand, within b2636at 2769.064 kb on - strand, within b2636at 2769.099 kb on + strand, within b2636at 2769.099 kb on + strand, within b2636at 2769.118 kb on - strandat 2769.242 kb on - strand, within yfjTat 2769.288 kb on - strand, within yfjT

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Per-strain Table

Position Strand Gene LocusTag Fraction LB Aerobic with Sulfamonomethoxine 0.000125 mM
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2,766,741 + -0.8
2,766,779 - yfjQ b2633 0.11 -0.1
2,766,816 + yfjQ b2633 0.16 -0.1
2,766,905 - yfjQ b2633 0.27 -0.4
2,767,046 - yfjQ b2633 0.44 -0.3
2,767,051 - yfjQ b2633 0.44 +0.4
2,767,051 - yfjQ b2633 0.44 -0.2
2,767,051 - yfjQ b2633 0.44 +0.4
2,767,055 + yfjQ b2633 0.45 -0.2
2,767,134 - yfjQ b2633 0.54 -1.2
2,767,150 - yfjQ b2633 0.56 +0.6
2,767,229 - yfjQ b2633 0.66 -0.4
2,767,328 - yfjQ b2633 0.78 +0.8
2,767,342 - yfjQ b2633 0.80 +0.6
2,767,342 - yfjQ b2633 0.80 -0.1
2,767,420 + yfjQ b2633 0.89 -0.6
2,767,519 + +0.6
2,767,563 + +0.9
2,767,605 + -0.1
2,767,649 + +0.1
2,767,658 - -0.5
2,767,904 + yfjR b2634 0.25 +0.9
2,768,029 - yfjR b2634 0.43 -0.2
2,768,215 + yfjR b2634 0.70 +0.0
2,768,258 - yfjR b2634 0.76 +0.3
2,768,258 - yfjR b2634 0.76 +0.2
2,768,388 - -0.5
2,768,429 - +0.5
2,768,429 - -2.3
2,768,437 + -0.2
2,768,445 - +1.4
2,768,460 - -0.6
2,768,470 - -0.4
2,768,582 - ypjK b2635 0.49 -0.5
2,768,582 - ypjK b2635 0.49 +0.2
2,768,582 - ypjK b2635 0.49 +0.2
2,768,791 - b2636 b2636 0.20 +1.5
2,768,810 + b2636 b2636 0.24 +0.4
2,768,843 - b2636 b2636 0.32 -0.4
2,768,845 - b2636 b2636 0.32 +0.6
2,768,919 - b2636 b2636 0.49 -0.5
2,768,941 - b2636 b2636 0.54 -0.5
2,768,941 - b2636 b2636 0.54 -1.7
2,769,051 - b2636 b2636 0.78 -0.1
2,769,064 - b2636 b2636 0.81 +0.5
2,769,064 - b2636 b2636 0.81 +1.0
2,769,099 + b2636 b2636 0.89 +1.0
2,769,099 + b2636 b2636 0.89 -0.6
2,769,118 - -0.0
2,769,242 - yfjT b2637 0.15 -0.5
2,769,288 - yfjT b2637 0.25 -0.6

Or see this region's nucleotide sequence