Strain Fitness in Escherichia coli BW25113 around b2170

Experiment: LB Aerobic with Sulfamonomethoxine 0.000125 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntfruB and setB are separated by 367 nucleotidessetB and yeiW overlap by 4 nucleotidesyeiW and yeiP are separated by 154 nucleotides b2169: fruB - fused fructose-specific PTS enzymes: IIA component/HPr component (NCBI), at 2,260,387 to 2,261,517 fruB b2170: setB - lactose/glucose efflux system (NCBI), at 2,261,885 to 2,263,066 setB b4502: yeiW - hypothetical protein (NCBI), at 2,263,063 to 2,263,317 yeiW b2171: yeiP - putative elongation factor (VIMSS), at 2,263,472 to 2,264,044 yeiP Position (kb) 2261 2262 2263 2264Strain fitness (log2 ratio) -1 0 1at 2260.911 kb on + strand, within fruBat 2260.911 kb on + strand, within fruBat 2260.938 kb on + strand, within fruBat 2261.006 kb on - strand, within fruBat 2261.202 kb on + strand, within fruBat 2261.241 kb on + strand, within fruBat 2261.241 kb on + strand, within fruBat 2261.255 kb on + strand, within fruBat 2261.330 kb on - strand, within fruBat 2261.476 kb on - strandat 2261.937 kb on - strandat 2262.160 kb on - strand, within setBat 2262.373 kb on - strand, within setBat 2262.590 kb on - strand, within setBat 2262.590 kb on - strand, within setBat 2262.752 kb on - strand, within setBat 2262.916 kb on + strand, within setBat 2262.925 kb on - strand, within setBat 2263.022 kb on + strandat 2263.022 kb on + strandat 2263.060 kb on + strandat 2263.088 kb on - strandat 2263.102 kb on - strand, within yeiWat 2263.102 kb on - strand, within yeiWat 2263.129 kb on + strand, within yeiWat 2263.136 kb on + strand, within yeiWat 2263.213 kb on - strand, within yeiWat 2263.213 kb on - strand, within yeiWat 2263.217 kb on + strand, within yeiWat 2263.286 kb on - strand, within yeiWat 2263.321 kb on - strandat 2263.563 kb on + strand, within yeiPat 2263.563 kb on + strand, within yeiPat 2263.575 kb on + strand, within yeiPat 2263.743 kb on - strand, within yeiPat 2263.813 kb on + strand, within yeiPat 2263.826 kb on + strand, within yeiPat 2263.826 kb on + strand, within yeiPat 2263.908 kb on - strand, within yeiPat 2263.929 kb on - strand, within yeiPat 2263.960 kb on - strand, within yeiPat 2264.034 kb on - strandat 2264.039 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB Aerobic with Sulfamonomethoxine 0.000125 mM
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2,260,911 + fruB b2169 0.46 -0.6
2,260,911 + fruB b2169 0.46 -1.5
2,260,938 + fruB b2169 0.49 -0.8
2,261,006 - fruB b2169 0.55 -0.4
2,261,202 + fruB b2169 0.72 +0.9
2,261,241 + fruB b2169 0.76 -1.0
2,261,241 + fruB b2169 0.76 -1.0
2,261,255 + fruB b2169 0.77 +0.1
2,261,330 - fruB b2169 0.83 +0.4
2,261,476 - -0.7
2,261,937 - +0.2
2,262,160 - setB b2170 0.23 +0.2
2,262,373 - setB b2170 0.41 +0.3
2,262,590 - setB b2170 0.60 +0.1
2,262,590 - setB b2170 0.60 -1.1
2,262,752 - setB b2170 0.73 +0.9
2,262,916 + setB b2170 0.87 +0.3
2,262,925 - setB b2170 0.88 +0.4
2,263,022 + +0.7
2,263,022 + -1.4
2,263,060 + -0.1
2,263,088 - +0.0
2,263,102 - yeiW b4502 0.15 +0.0
2,263,102 - yeiW b4502 0.15 -0.2
2,263,129 + yeiW b4502 0.26 +0.1
2,263,136 + yeiW b4502 0.29 -0.2
2,263,213 - yeiW b4502 0.59 -0.2
2,263,213 - yeiW b4502 0.59 -0.7
2,263,217 + yeiW b4502 0.60 +1.3
2,263,286 - yeiW b4502 0.87 +0.1
2,263,321 - +0.2
2,263,563 + yeiP b2171 0.16 +0.3
2,263,563 + yeiP b2171 0.16 +0.3
2,263,575 + yeiP b2171 0.18 +1.7
2,263,743 - yeiP b2171 0.47 -0.1
2,263,813 + yeiP b2171 0.60 -0.3
2,263,826 + yeiP b2171 0.62 -1.1
2,263,826 + yeiP b2171 0.62 -0.2
2,263,908 - yeiP b2171 0.76 +1.1
2,263,929 - yeiP b2171 0.80 +0.3
2,263,960 - yeiP b2171 0.85 -0.2
2,264,034 - +0.5
2,264,039 + -0.1

Or see this region's nucleotide sequence