Strain Fitness in Escherichia coli BW25113 around b1565

Experiment: LB Aerobic with Sulfamonomethoxine 0.000125 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrem and hokD are separated by 216 nucleotideshokD and relE are separated by 71 nucleotidesrelE and relB overlap by 1 nucleotidesrelB and ydfV are separated by 24 nucleotidesydfV and flxA are separated by 202 nucleotidesflxA and intK are separated by 436 nucleotides b1561: rem - Qin prophage; predicted protein (NCBI), at 1,642,675 to 1,642,926 rem b1562: hokD - Qin prophage; small toxic polypeptide (NCBI), at 1,643,143 to 1,643,298 hokD b1563: relE - Qin prophage; toxin of the RelE-RelB toxin-antitoxin system (NCBI), at 1,643,370 to 1,643,657 relE b1564: relB - Qin prophage; bifunctional antitoxin of the RelE-RelB toxin-antitoxin system/ transcriptional repressor (NCBI), at 1,643,657 to 1,643,896 relB b1565: ydfV - Qin prophage; predicted protein (NCBI), at 1,643,921 to 1,644,226 ydfV b1566: flxA - Qin prophage; predicted protein (NCBI), at 1,644,429 to 1,644,761 flxA b1567: intK - Qin prophage; predicted protein (RefSeq), at 1,645,198 to 1,645,380 intK Position (kb) 1643 1644 1645Strain fitness (log2 ratio) -2 -1 0 1at 1643.141 kb on + strandat 1643.261 kb on - strand, within hokDat 1643.463 kb on - strand, within relEat 1643.463 kb on - strand, within relEat 1643.482 kb on + strand, within relEat 1643.661 kb on + strandat 1643.947 kb on - strandat 1643.963 kb on + strand, within ydfVat 1643.963 kb on + strand, within ydfVat 1643.963 kb on + strand, within ydfVat 1644.038 kb on - strand, within ydfVat 1644.041 kb on + strand, within ydfVat 1644.049 kb on - strand, within ydfVat 1644.187 kb on - strand, within ydfVat 1644.187 kb on - strand, within ydfVat 1644.248 kb on - strandat 1644.258 kb on - strandat 1644.283 kb on + strandat 1644.290 kb on + strandat 1644.306 kb on + strandat 1644.480 kb on + strand, within flxAat 1644.647 kb on + strand, within flxAat 1644.647 kb on + strand, within flxAat 1644.656 kb on + strand, within flxAat 1644.690 kb on + strand, within flxAat 1644.756 kb on + strandat 1644.756 kb on + strandat 1644.758 kb on + strandat 1644.774 kb on + strandat 1644.787 kb on - strandat 1644.792 kb on - strandat 1644.809 kb on - strandat 1644.809 kb on - strandat 1644.870 kb on - strandat 1644.870 kb on - strandat 1644.870 kb on - strandat 1644.890 kb on - strandat 1644.918 kb on - strandat 1644.986 kb on - strandat 1645.019 kb on + strandat 1645.019 kb on + strandat 1645.027 kb on - strandat 1645.027 kb on - strandat 1645.038 kb on - strandat 1645.060 kb on + strandat 1645.062 kb on + strandat 1645.087 kb on + strandat 1645.116 kb on - strandat 1645.144 kb on + strandat 1645.145 kb on + strandat 1645.174 kb on - strandat 1645.176 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB Aerobic with Sulfamonomethoxine 0.000125 mM
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1,643,141 + -0.8
1,643,261 - hokD b1562 0.76 -0.5
1,643,463 - relE b1563 0.32 +0.2
1,643,463 - relE b1563 0.32 +0.3
1,643,482 + relE b1563 0.39 -0.4
1,643,661 + +0.1
1,643,947 - +0.8
1,643,963 + ydfV b1565 0.14 +0.6
1,643,963 + ydfV b1565 0.14 -0.2
1,643,963 + ydfV b1565 0.14 +0.4
1,644,038 - ydfV b1565 0.38 +1.0
1,644,041 + ydfV b1565 0.39 -1.0
1,644,049 - ydfV b1565 0.42 -0.0
1,644,187 - ydfV b1565 0.87 +0.5
1,644,187 - ydfV b1565 0.87 +1.2
1,644,248 - +1.2
1,644,258 - +1.2
1,644,283 + -0.4
1,644,290 + -0.3
1,644,306 + +0.5
1,644,480 + flxA b1566 0.15 -0.2
1,644,647 + flxA b1566 0.65 -1.2
1,644,647 + flxA b1566 0.65 -1.4
1,644,656 + flxA b1566 0.68 -2.1
1,644,690 + flxA b1566 0.78 -0.7
1,644,756 + +1.2
1,644,756 + +0.6
1,644,758 + -0.3
1,644,774 + -1.8
1,644,787 - +1.2
1,644,792 - +1.2
1,644,809 - -0.8
1,644,809 - +1.2
1,644,870 - -0.1
1,644,870 - +1.2
1,644,870 - +0.9
1,644,890 - +0.0
1,644,918 - -0.2
1,644,986 - -0.0
1,645,019 + +1.2
1,645,019 + +1.2
1,645,027 - -0.2
1,645,027 - +0.2
1,645,038 - -0.0
1,645,060 + -0.7
1,645,062 + -0.4
1,645,087 + +0.9
1,645,116 - -0.0
1,645,144 + -0.0
1,645,145 + +0.8
1,645,174 - +0.1
1,645,176 - -0.2

Or see this region's nucleotide sequence