Strain Fitness in Escherichia coli BW25113 around b1539

Experiment: LB Aerobic with Sulfamonomethoxine 0.000125 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntdcp and ydfG are separated by 136 nucleotidesydfG and ydfH are separated by 88 nucleotidesydfH and ydfZ are separated by 176 nucleotides b1538: dcp - dipeptidyl carboxypeptidase II (NCBI), at 1,623,359 to 1,625,404 dcp b1539: ydfG - L-allo-threonine dehydrogenase, NAD(P)-binding (NCBI), at 1,625,541 to 1,626,287 ydfG b1540: ydfH - predicted DNA-binding transcriptional regulator (NCBI), at 1,626,376 to 1,627,062 ydfH b1541: ydfZ - hypothetical protein (NCBI), at 1,627,239 to 1,627,442 ydfZ Position (kb) 1625 1626 1627Strain fitness (log2 ratio) -1 0 1at 1624.987 kb on + strand, within dcpat 1624.992 kb on + strand, within dcpat 1625.044 kb on + strand, within dcpat 1625.044 kb on + strand, within dcpat 1625.169 kb on - strand, within dcpat 1625.380 kb on + strandat 1625.442 kb on - strandat 1625.443 kb on - strandat 1625.443 kb on - strandat 1625.681 kb on + strand, within ydfGat 1625.871 kb on + strand, within ydfGat 1625.871 kb on + strand, within ydfGat 1626.043 kb on - strand, within ydfGat 1626.461 kb on + strand, within ydfHat 1626.955 kb on + strand, within ydfHat 1627.253 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB Aerobic with Sulfamonomethoxine 0.000125 mM
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1,624,987 + dcp b1538 0.80 -1.0
1,624,992 + dcp b1538 0.80 +1.2
1,625,044 + dcp b1538 0.82 +1.2
1,625,044 + dcp b1538 0.82 +1.6
1,625,169 - dcp b1538 0.88 -0.1
1,625,380 + +0.6
1,625,442 - -0.5
1,625,443 - -1.0
1,625,443 - +0.3
1,625,681 + ydfG b1539 0.19 +0.1
1,625,871 + ydfG b1539 0.44 -0.1
1,625,871 + ydfG b1539 0.44 +0.1
1,626,043 - ydfG b1539 0.67 +1.1
1,626,461 + ydfH b1540 0.12 +0.0
1,626,955 + ydfH b1540 0.84 +0.2
1,627,253 - -0.5

Or see this region's nucleotide sequence