Strain Fitness in Escherichia coli BW25113 around b4360

Experiment: LB Aerobic with Sulfamonomethoxine 0.00025 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntmdoB and yjjA are separated by 253 nucleotidesyjjA and dnaC are separated by 48 nucleotidesdnaC and dnaT are separated by 2 nucleotides b4359: mdoB - phosphoglycerol transferase I (VIMSS), at 4,595,173 to 4,597,464 mdoB b4360: yjjA - putative glycoprotein/receptor (VIMSS), at 4,597,718 to 4,598,212 yjjA b4361: dnaC - DNA biosynthesis protein (NCBI), at 4,598,261 to 4,598,998 dnaC b4362: dnaT - primosomal protein I (NCBI), at 4,599,001 to 4,599,540 dnaT Position (kb) 4597 4598 4599Strain fitness (log2 ratio) -1 0 1 2at 4596.776 kb on + strand, within mdoBat 4596.783 kb on - strand, within mdoBat 4596.784 kb on - strand, within mdoBat 4596.806 kb on - strand, within mdoBat 4596.806 kb on - strand, within mdoBat 4596.810 kb on - strand, within mdoBat 4596.813 kb on - strand, within mdoBat 4596.813 kb on - strand, within mdoBat 4596.838 kb on + strand, within mdoBat 4596.838 kb on + strand, within mdoBat 4596.900 kb on + strand, within mdoBat 4596.900 kb on + strand, within mdoBat 4596.920 kb on - strand, within mdoBat 4596.935 kb on + strand, within mdoBat 4596.973 kb on - strand, within mdoBat 4596.973 kb on - strand, within mdoBat 4596.975 kb on + strand, within mdoBat 4597.011 kb on + strand, within mdoBat 4597.158 kb on + strand, within mdoBat 4597.158 kb on + strand, within mdoBat 4597.173 kb on + strand, within mdoBat 4597.173 kb on + strand, within mdoBat 4597.183 kb on - strand, within mdoBat 4597.183 kb on - strand, within mdoBat 4597.190 kb on + strand, within mdoBat 4597.190 kb on + strand, within mdoBat 4597.195 kb on - strand, within mdoBat 4597.195 kb on - strand, within mdoBat 4597.199 kb on + strand, within mdoBat 4597.210 kb on - strand, within mdoBat 4597.215 kb on - strand, within mdoBat 4597.220 kb on - strand, within mdoBat 4597.220 kb on - strand, within mdoBat 4597.270 kb on + strandat 4597.276 kb on + strandat 4597.276 kb on + strandat 4597.365 kb on - strandat 4597.398 kb on - strandat 4597.437 kb on - strandat 4597.527 kb on - strandat 4597.531 kb on + strandat 4597.531 kb on + strandat 4597.538 kb on + strandat 4597.538 kb on + strandat 4597.543 kb on - strandat 4597.616 kb on + strandat 4597.626 kb on + strandat 4597.626 kb on + strandat 4597.634 kb on - strandat 4597.634 kb on - strandat 4597.656 kb on + strandat 4597.671 kb on - strandat 4597.695 kb on + strandat 4597.738 kb on - strandat 4597.738 kb on - strandat 4597.738 kb on - strandat 4597.750 kb on - strandat 4597.750 kb on - strandat 4597.751 kb on - strandat 4597.755 kb on - strandat 4597.762 kb on + strandat 4597.802 kb on - strand, within yjjAat 4597.892 kb on + strand, within yjjAat 4597.941 kb on + strand, within yjjAat 4597.978 kb on - strand, within yjjAat 4598.000 kb on - strand, within yjjAat 4598.117 kb on - strand, within yjjAat 4598.220 kb on - strandat 4598.220 kb on - strandat 4598.235 kb on - strandat 4598.240 kb on - strandat 4598.240 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB Aerobic with Sulfamonomethoxine 0.00025 mM
remove
4,596,776 + mdoB b4359 0.70 +0.7
4,596,783 - mdoB b4359 0.70 -0.6
4,596,784 - mdoB b4359 0.70 -0.2
4,596,806 - mdoB b4359 0.71 -0.2
4,596,806 - mdoB b4359 0.71 +0.2
4,596,810 - mdoB b4359 0.71 +0.1
4,596,813 - mdoB b4359 0.72 -0.1
4,596,813 - mdoB b4359 0.72 -0.1
4,596,838 + mdoB b4359 0.73 +0.3
4,596,838 + mdoB b4359 0.73 -1.3
4,596,900 + mdoB b4359 0.75 -0.1
4,596,900 + mdoB b4359 0.75 -0.2
4,596,920 - mdoB b4359 0.76 -0.2
4,596,935 + mdoB b4359 0.77 +0.1
4,596,973 - mdoB b4359 0.79 +1.0
4,596,973 - mdoB b4359 0.79 +1.0
4,596,975 + mdoB b4359 0.79 -1.3
4,597,011 + mdoB b4359 0.80 -0.2
4,597,158 + mdoB b4359 0.87 -0.5
4,597,158 + mdoB b4359 0.87 +1.4
4,597,173 + mdoB b4359 0.87 +1.7
4,597,173 + mdoB b4359 0.87 +0.4
4,597,183 - mdoB b4359 0.88 +0.5
4,597,183 - mdoB b4359 0.88 -0.3
4,597,190 + mdoB b4359 0.88 -0.5
4,597,190 + mdoB b4359 0.88 -0.4
4,597,195 - mdoB b4359 0.88 +0.1
4,597,195 - mdoB b4359 0.88 +0.4
4,597,199 + mdoB b4359 0.88 -0.5
4,597,210 - mdoB b4359 0.89 -0.6
4,597,215 - mdoB b4359 0.89 -1.1
4,597,220 - mdoB b4359 0.89 +1.9
4,597,220 - mdoB b4359 0.89 +0.1
4,597,270 + -0.3
4,597,276 + +0.3
4,597,276 + +0.0
4,597,365 - -0.1
4,597,398 - +0.2
4,597,437 - -0.2
4,597,527 - -1.7
4,597,531 + -0.6
4,597,531 + -0.4
4,597,538 + -1.3
4,597,538 + +0.1
4,597,543 - -0.6
4,597,616 + +0.1
4,597,626 + +0.4
4,597,626 + +1.9
4,597,634 - -0.4
4,597,634 - -1.2
4,597,656 + +0.3
4,597,671 - -0.1
4,597,695 + -0.9
4,597,738 - +0.1
4,597,738 - +0.0
4,597,738 - -0.3
4,597,750 - +1.4
4,597,750 - -0.5
4,597,751 - +1.2
4,597,755 - -0.2
4,597,762 + +1.1
4,597,802 - yjjA b4360 0.17 +0.4
4,597,892 + yjjA b4360 0.35 +1.0
4,597,941 + yjjA b4360 0.45 +0.6
4,597,978 - yjjA b4360 0.53 -0.3
4,598,000 - yjjA b4360 0.57 -0.3
4,598,117 - yjjA b4360 0.81 +0.9
4,598,220 - -0.2
4,598,220 - +0.3
4,598,235 - -0.2
4,598,240 - -0.9
4,598,240 - -0.7

Or see this region's nucleotide sequence