Strain Fitness in Escherichia coli BW25113 around b2443

Experiment: LB Aerobic with Sulfamonomethoxine 0.00025 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntintZ and yffL are separated by 190 nucleotidesyffL and yffM are separated by 469 nucleotidesyffM and yffN are separated by 11 nucleotides b2442: intZ - CPZ-55 prophage; predicted integrase (RefSeq), at 2,556,880 to 2,558,088 intZ b2443: yffL - CPZ-55 prophage; predicted protein (NCBI), at 2,558,279 to 2,558,920 yffL b2444: yffM - CPZ-55 prophage; predicted protein (NCBI), at 2,559,390 to 2,559,635 yffM b2445: yffN - CPZ-55 prophage; predicted protein (RefSeq), at 2,559,647 to 2,560,015 yffN Position (kb) 2558 2559Strain fitness (log2 ratio) -2 -1 0 1 2at 2557.406 kb on - strand, within intZat 2557.475 kb on - strand, within intZat 2557.764 kb on + strand, within intZat 2557.808 kb on - strand, within intZat 2557.864 kb on + strand, within intZat 2558.028 kb on - strandat 2558.342 kb on + strandat 2558.504 kb on + strand, within yffLat 2558.504 kb on + strand, within yffLat 2558.561 kb on + strand, within yffLat 2558.678 kb on + strand, within yffLat 2558.734 kb on + strand, within yffLat 2558.749 kb on - strand, within yffLat 2558.754 kb on - strand, within yffLat 2558.812 kb on + strand, within yffLat 2558.941 kb on - strandat 2559.256 kb on + strandat 2559.410 kb on - strandat 2559.410 kb on - strandat 2559.536 kb on - strand, within yffMat 2559.536 kb on - strand, within yffMat 2559.699 kb on + strand, within yffNat 2559.794 kb on - strand, within yffNat 2559.794 kb on - strand, within yffNat 2559.897 kb on + strand, within yffNat 2559.897 kb on + strand, within yffNat 2559.915 kb on - strand, within yffN

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB Aerobic with Sulfamonomethoxine 0.00025 mM
remove
2,557,406 - intZ b2442 0.44 -0.2
2,557,475 - intZ b2442 0.49 +0.6
2,557,764 + intZ b2442 0.73 +1.0
2,557,808 - intZ b2442 0.77 +0.5
2,557,864 + intZ b2442 0.81 +0.2
2,558,028 - +0.1
2,558,342 + -0.7
2,558,504 + yffL b2443 0.35 +0.6
2,558,504 + yffL b2443 0.35 +0.5
2,558,561 + yffL b2443 0.44 +0.1
2,558,678 + yffL b2443 0.62 +1.8
2,558,734 + yffL b2443 0.71 +0.7
2,558,749 - yffL b2443 0.73 -0.8
2,558,754 - yffL b2443 0.74 +2.2
2,558,812 + yffL b2443 0.83 -0.4
2,558,941 - -0.1
2,559,256 + +0.6
2,559,410 - -0.8
2,559,410 - -1.9
2,559,536 - yffM b2444 0.59 -0.5
2,559,536 - yffM b2444 0.59 -0.1
2,559,699 + yffN b2445 0.14 -1.2
2,559,794 - yffN b2445 0.40 -0.5
2,559,794 - yffN b2445 0.40 +1.0
2,559,897 + yffN b2445 0.68 -0.7
2,559,897 + yffN b2445 0.68 -0.6
2,559,915 - yffN b2445 0.73 -0.4

Or see this region's nucleotide sequence