Experiment: 4-Aminobutyric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3763 and Atu3764 are separated by 317 nucleotides Atu3764 and Atu3765 are separated by 169 nucleotides
Atu3763: Atu3763 - hypothetical protein, at 842,761 to 844,524
Atu3763
Atu3764: Atu3764 - sigma 54 dependent transcriptional activator, at 844,842 to 846,383
Atu3764
Atu3765: Atu3765 - oligoendopeptidase F, at 846,553 to 848,403
Atu3765
Position (kb) 844
845
846
847 Strain fitness (log2 ratio) -1
0
1
2 at 843.985 kb on - strand, within Atu3763 at 844.730 kb on + strand at 844.825 kb on - strand at 844.857 kb on + strand at 844.938 kb on - strand at 844.985 kb on + strand at 845.095 kb on - strand, within Atu3764 at 845.100 kb on + strand, within Atu3764 at 845.185 kb on - strand, within Atu3764 at 845.240 kb on + strand, within Atu3764 at 845.248 kb on - strand, within Atu3764 at 845.250 kb on - strand, within Atu3764 at 845.258 kb on + strand, within Atu3764 at 845.356 kb on + strand, within Atu3764 at 845.356 kb on + strand, within Atu3764 at 845.364 kb on - strand, within Atu3764 at 845.436 kb on - strand, within Atu3764 at 845.508 kb on - strand, within Atu3764 at 845.508 kb on - strand, within Atu3764 at 845.508 kb on - strand, within Atu3764 at 845.605 kb on - strand, within Atu3764 at 845.621 kb on + strand, within Atu3764 at 845.666 kb on - strand, within Atu3764 at 845.788 kb on + strand, within Atu3764 at 845.796 kb on - strand, within Atu3764 at 845.811 kb on + strand, within Atu3764 at 845.884 kb on + strand, within Atu3764 at 845.892 kb on - strand, within Atu3764 at 845.973 kb on + strand, within Atu3764 at 846.426 kb on + strand at 846.426 kb on + strand at 846.434 kb on - strand at 846.434 kb on - strand at 846.434 kb on - strand at 846.557 kb on + strand at 846.610 kb on - strand at 846.651 kb on + strand at 846.683 kb on - strand at 846.759 kb on + strand, within Atu3765 at 846.759 kb on + strand, within Atu3765 at 846.759 kb on + strand, within Atu3765 at 846.767 kb on - strand, within Atu3765 at 846.767 kb on - strand, within Atu3765 at 846.772 kb on + strand, within Atu3765 at 846.790 kb on + strand, within Atu3765 at 846.795 kb on + strand, within Atu3765 at 846.795 kb on + strand, within Atu3765 at 846.795 kb on - strand, within Atu3765 at 846.803 kb on - strand, within Atu3765 at 846.808 kb on - strand, within Atu3765 at 846.888 kb on + strand, within Atu3765 at 846.902 kb on - strand, within Atu3765 at 846.936 kb on + strand, within Atu3765 at 846.944 kb on - strand, within Atu3765 at 847.041 kb on + strand, within Atu3765 at 847.117 kb on + strand, within Atu3765 at 847.117 kb on + strand, within Atu3765 at 847.117 kb on + strand, within Atu3765 at 847.282 kb on - strand, within Atu3765 at 847.306 kb on - strand, within Atu3765 at 847.364 kb on + strand, within Atu3765 at 847.372 kb on - strand, within Atu3765
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Aminobutyric (C) remove 843,985 - Atu3763 0.69 -0.2 844,730 + +0.0 844,825 - +0.7 844,857 + +0.3 844,938 - -0.3 844,985 + +0.1 845,095 - Atu3764 0.16 +0.2 845,100 + Atu3764 0.17 +0.3 845,185 - Atu3764 0.22 +0.4 845,240 + Atu3764 0.26 +0.8 845,248 - Atu3764 0.26 +0.8 845,250 - Atu3764 0.26 +1.0 845,258 + Atu3764 0.27 +0.4 845,356 + Atu3764 0.33 -0.2 845,356 + Atu3764 0.33 +0.9 845,364 - Atu3764 0.34 +0.3 845,436 - Atu3764 0.39 +1.2 845,508 - Atu3764 0.43 +0.7 845,508 - Atu3764 0.43 +0.5 845,508 - Atu3764 0.43 +1.8 845,605 - Atu3764 0.49 +0.1 845,621 + Atu3764 0.51 +0.6 845,666 - Atu3764 0.53 -0.1 845,788 + Atu3764 0.61 +1.0 845,796 - Atu3764 0.62 +0.7 845,811 + Atu3764 0.63 +1.3 845,884 + Atu3764 0.68 +0.6 845,892 - Atu3764 0.68 +0.9 845,973 + Atu3764 0.73 +0.6 846,426 + +0.2 846,426 + +0.3 846,434 - +0.4 846,434 - +0.3 846,434 - +0.1 846,557 + -0.3 846,610 - -0.2 846,651 + -0.0 846,683 - -0.3 846,759 + Atu3765 0.11 +0.3 846,759 + Atu3765 0.11 -0.2 846,759 + Atu3765 0.11 -0.0 846,767 - Atu3765 0.12 +0.5 846,767 - Atu3765 0.12 +0.2 846,772 + Atu3765 0.12 -0.2 846,790 + Atu3765 0.13 -0.4 846,795 + Atu3765 0.13 +0.1 846,795 + Atu3765 0.13 -0.1 846,795 - Atu3765 0.13 -0.0 846,803 - Atu3765 0.14 -0.8 846,808 - Atu3765 0.14 +1.2 846,888 + Atu3765 0.18 -0.2 846,902 - Atu3765 0.19 -0.3 846,936 + Atu3765 0.21 -0.5 846,944 - Atu3765 0.21 +1.4 847,041 + Atu3765 0.26 -0.5 847,117 + Atu3765 0.30 -0.3 847,117 + Atu3765 0.30 -0.2 847,117 + Atu3765 0.30 +0.1 847,282 - Atu3765 0.39 +0.4 847,306 - Atu3765 0.41 +0.2 847,364 + Atu3765 0.44 +0.3 847,372 - Atu3765 0.44 +0.2
Or see this region's nucleotide sequence