Experiment: 4-Aminobutyric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0854 and Atu0855 are separated by 97 nucleotides Atu0855 and Atu0856 are separated by 47 nucleotides Atu0856 and Atu0857 are separated by 252 nucleotides Atu0857 and Atu0858 overlap by 47 nucleotides
Atu0854: Atu0854 - hypothetical protein, at 854,313 to 854,807
Atu0854
Atu0855: Atu0855 - hypothetical protein, at 854,905 to 855,684
Atu0855
Atu0856: Atu0856 - transcriptional regulator, LysR family, at 855,732 to 856,496
Atu0856
Atu0857: Atu0857 - oxidoreductase, at 856,749 to 857,471
Atu0857
Atu0858: Atu0858 - putative carboxymuconolactone decarboxylase, at 857,425 to 857,958
Atu0858
Position (kb) 855
856
857 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 854.797 kb on - strand at 854.821 kb on + strand at 854.896 kb on - strand at 855.032 kb on + strand, within Atu0855 at 855.032 kb on + strand, within Atu0855 at 855.089 kb on + strand, within Atu0855 at 855.090 kb on + strand, within Atu0855 at 855.097 kb on + strand, within Atu0855 at 855.098 kb on - strand, within Atu0855 at 855.104 kb on - strand, within Atu0855 at 855.105 kb on - strand, within Atu0855 at 855.109 kb on + strand, within Atu0855 at 855.117 kb on - strand, within Atu0855 at 855.124 kb on + strand, within Atu0855 at 855.124 kb on + strand, within Atu0855 at 855.132 kb on - strand, within Atu0855 at 855.145 kb on + strand, within Atu0855 at 855.180 kb on - strand, within Atu0855 at 855.199 kb on + strand, within Atu0855 at 855.199 kb on + strand, within Atu0855 at 855.207 kb on - strand, within Atu0855 at 855.266 kb on - strand, within Atu0855 at 855.266 kb on - strand, within Atu0855 at 855.266 kb on - strand, within Atu0855 at 855.338 kb on + strand, within Atu0855 at 855.338 kb on + strand, within Atu0855 at 855.346 kb on - strand, within Atu0855 at 855.391 kb on + strand, within Atu0855 at 855.462 kb on + strand, within Atu0855 at 855.462 kb on + strand, within Atu0855 at 855.625 kb on + strand at 855.785 kb on - strand at 855.802 kb on + strand at 855.810 kb on - strand, within Atu0856 at 855.870 kb on + strand, within Atu0856 at 855.906 kb on + strand, within Atu0856 at 855.908 kb on - strand, within Atu0856 at 855.914 kb on - strand, within Atu0856 at 856.123 kb on - strand, within Atu0856 at 856.173 kb on - strand, within Atu0856 at 856.209 kb on + strand, within Atu0856 at 856.222 kb on - strand, within Atu0856 at 856.257 kb on + strand, within Atu0856 at 856.270 kb on + strand, within Atu0856 at 856.334 kb on - strand, within Atu0856 at 856.426 kb on + strand at 856.454 kb on + strand at 856.510 kb on - strand at 856.510 kb on - strand at 856.526 kb on - strand at 856.544 kb on + strand at 856.552 kb on - strand at 856.805 kb on - strand at 856.815 kb on - strand at 856.890 kb on - strand, within Atu0857 at 856.981 kb on + strand, within Atu0857 at 856.988 kb on - strand, within Atu0857 at 857.063 kb on + strand, within Atu0857 at 857.071 kb on + strand, within Atu0857 at 857.084 kb on + strand, within Atu0857 at 857.140 kb on + strand, within Atu0857 at 857.148 kb on - strand, within Atu0857 at 857.183 kb on - strand, within Atu0857 at 857.278 kb on + strand, within Atu0857 at 857.349 kb on + strand, within Atu0857 at 857.351 kb on - strand, within Atu0857 at 857.378 kb on - strand, within Atu0857
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Aminobutyric (C) remove 854,797 - -0.1 854,821 + +0.5 854,896 - -1.1 855,032 + Atu0855 0.16 -0.1 855,032 + Atu0855 0.16 -0.6 855,089 + Atu0855 0.24 +0.3 855,090 + Atu0855 0.24 -0.2 855,097 + Atu0855 0.25 +0.7 855,098 - Atu0855 0.25 +0.8 855,104 - Atu0855 0.26 +0.1 855,105 - Atu0855 0.26 -0.3 855,109 + Atu0855 0.26 +0.4 855,117 - Atu0855 0.27 -0.4 855,124 + Atu0855 0.28 -0.1 855,124 + Atu0855 0.28 -0.2 855,132 - Atu0855 0.29 +0.7 855,145 + Atu0855 0.31 +0.5 855,180 - Atu0855 0.35 +0.6 855,199 + Atu0855 0.38 +0.0 855,199 + Atu0855 0.38 -0.2 855,207 - Atu0855 0.39 +0.7 855,266 - Atu0855 0.46 +0.2 855,266 - Atu0855 0.46 +0.3 855,266 - Atu0855 0.46 +0.3 855,338 + Atu0855 0.56 -0.9 855,338 + Atu0855 0.56 +0.9 855,346 - Atu0855 0.57 -0.6 855,391 + Atu0855 0.62 +0.3 855,462 + Atu0855 0.71 +0.6 855,462 + Atu0855 0.71 +0.2 855,625 + -0.3 855,785 - +0.1 855,802 + -0.3 855,810 - Atu0856 0.10 -0.9 855,870 + Atu0856 0.18 +0.9 855,906 + Atu0856 0.23 -0.9 855,908 - Atu0856 0.23 +4.0 855,914 - Atu0856 0.24 -0.3 856,123 - Atu0856 0.51 -1.0 856,173 - Atu0856 0.58 -0.2 856,209 + Atu0856 0.62 +0.8 856,222 - Atu0856 0.64 -0.2 856,257 + Atu0856 0.69 -0.2 856,270 + Atu0856 0.70 +0.1 856,334 - Atu0856 0.79 -0.1 856,426 + -0.3 856,454 + -0.5 856,510 - -0.1 856,510 - -0.2 856,526 - +0.7 856,544 + +0.6 856,552 - +0.3 856,805 - -0.3 856,815 - +0.3 856,890 - Atu0857 0.20 +0.4 856,981 + Atu0857 0.32 -0.2 856,988 - Atu0857 0.33 +0.8 857,063 + Atu0857 0.43 -0.2 857,071 + Atu0857 0.45 +0.6 857,084 + Atu0857 0.46 +0.6 857,140 + Atu0857 0.54 +0.0 857,148 - Atu0857 0.55 +0.9 857,183 - Atu0857 0.60 +0.4 857,278 + Atu0857 0.73 +0.4 857,349 + Atu0857 0.83 -0.1 857,351 - Atu0857 0.83 -0.3 857,378 - Atu0857 0.87 -0.4
Or see this region's nucleotide sequence