Experiment: p-Coumaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3326 and Atu3327 are separated by 193 nucleotides Atu3327 and Atu8030 are separated by 421 nucleotides Atu8030 and Atu3328 are separated by 15 nucleotides
Atu3326: Atu3326 - exopolysaccharide production protein, at 359,646 to 360,902
Atu3326
Atu3327: Atu3327 - succinoglycan exopolysaccharide synthesis protein, at 361,096 to 361,776
Atu3327
Atu8030: Atu8030 - hypothetical protein, at 362,198 to 362,380
Atu8030
Atu3328: Atu3328 - aldehyde dehydrogenase, at 362,396 to 362,944
Atu3328
Position (kb) 361
362 Strain fitness (log2 ratio) -1
0
1 at 361.179 kb on - strand, within Atu3327 at 361.357 kb on - strand, within Atu3327 at 361.414 kb on - strand, within Atu3327 at 361.664 kb on - strand, within Atu3327 at 361.811 kb on + strand at 361.906 kb on - strand at 361.999 kb on + strand at 362.055 kb on + strand at 362.370 kb on + strand at 362.423 kb on + strand at 362.678 kb on + strand, within Atu3328 at 362.715 kb on - strand, within Atu3328 at 362.715 kb on - strand, within Atu3328 at 362.725 kb on - strand, within Atu3328 at 362.725 kb on - strand, within Atu3328 at 362.725 kb on - strand, within Atu3328
Per-strain Table
Position Strand Gene LocusTag Fraction p-Coumaric (C) remove 361,179 - Atu3327 0.12 +0.3 361,357 - Atu3327 0.38 -0.1 361,414 - Atu3327 0.47 -0.6 361,664 - Atu3327 0.83 -0.5 361,811 + -0.0 361,906 - +0.1 361,999 + +0.0 362,055 + -0.2 362,370 + +0.0 362,423 + +0.4 362,678 + Atu3328 0.51 +0.4 362,715 - Atu3328 0.58 +0.1 362,715 - Atu3328 0.58 +0.5 362,725 - Atu3328 0.60 +0.4 362,725 - Atu3328 0.60 -0.1 362,725 - Atu3328 0.60 +0.2
Or see this region's nucleotide sequence