Strain Fitness in Escherichia coli BW25113 around b1148

Experiment: LB Aerobic with Phenazine ethosulfate 0.0000625 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntymfK and b1146 are separated by 90 nucleotidesb1146 and ymfL are separated by 43 nucleotidesymfL and ymfM overlap by 4 nucleotidesymfM and oweE are separated by 9 nucleotidesoweE and aaaE are separated by 0 nucleotides b1145: ymfK - e14 prophage; repressor protein phage e14 (NCBI), at 1,201,482 to 1,202,156 ymfK b1146: b1146 - orf, hypothetical protein (VIMSS), at 1,202,247 to 1,202,447 b1146 b1147: ymfL - e14 prophage; predicted DNA-binding transcriptional regulator (RefSeq), at 1,202,491 to 1,203,048 ymfL b1148: ymfM - e14 prophage; predicted protein (NCBI), at 1,203,045 to 1,203,383 ymfM b4692: oweE - no description, at 1,203,393 to 1,203,626 oweE b4693: aaaE - no description, at 1,203,627 to 1,204,760 aaaE Position (kb) 1203 1204Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1202.248 kb on - strandat 1202.825 kb on - strand, within ymfLat 1202.869 kb on - strand, within ymfLat 1202.869 kb on - strand, within ymfLat 1202.897 kb on - strand, within ymfLat 1202.897 kb on - strand, within ymfLat 1202.909 kb on - strand, within ymfLat 1203.060 kb on + strandat 1203.060 kb on + strandat 1203.173 kb on - strand, within ymfMat 1203.180 kb on - strand, within ymfMat 1203.189 kb on - strand, within ymfMat 1203.189 kb on - strand, within ymfMat 1203.378 kb on + strandat 1203.378 kb on + strandat 1203.435 kb on + strand, within oweEat 1203.490 kb on + strand, within oweEat 1203.556 kb on + strand, within oweEat 1203.617 kb on + strandat 1203.617 kb on + strandat 1203.646 kb on - strandat 1203.684 kb on - strandat 1203.684 kb on - strandat 1203.872 kb on + strand, within aaaEat 1203.872 kb on + strand, within aaaEat 1203.872 kb on + strand, within aaaEat 1203.872 kb on + strand, within aaaEat 1203.880 kb on - strand, within aaaEat 1203.891 kb on + strand, within aaaEat 1204.010 kb on + strand, within aaaEat 1204.018 kb on - strand, within aaaEat 1204.078 kb on - strand, within aaaEat 1204.084 kb on + strand, within aaaEat 1204.196 kb on + strand, within aaaEat 1204.204 kb on - strand, within aaaEat 1204.237 kb on - strand, within aaaE

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB Aerobic with Phenazine ethosulfate 0.0000625 mM
remove
1,202,248 - +0.1
1,202,825 - ymfL b1147 0.60 -0.3
1,202,869 - ymfL b1147 0.68 +1.7
1,202,869 - ymfL b1147 0.68 +0.9
1,202,897 - ymfL b1147 0.73 +0.7
1,202,897 - ymfL b1147 0.73 +0.2
1,202,909 - ymfL b1147 0.75 -1.2
1,203,060 + +1.2
1,203,060 + +0.7
1,203,173 - ymfM b1148 0.38 +0.8
1,203,180 - ymfM b1148 0.40 +4.5
1,203,189 - ymfM b1148 0.42 -0.8
1,203,189 - ymfM b1148 0.42 +0.3
1,203,378 + -0.3
1,203,378 + -0.5
1,203,435 + oweE b4692 0.18 -0.8
1,203,490 + oweE b4692 0.41 +0.9
1,203,556 + oweE b4692 0.70 -0.0
1,203,617 + -0.9
1,203,617 + +0.3
1,203,646 - -0.8
1,203,684 - +0.2
1,203,684 - +1.0
1,203,872 + aaaE b4693 0.22 +0.8
1,203,872 + aaaE b4693 0.22 -1.0
1,203,872 + aaaE b4693 0.22 -2.0
1,203,872 + aaaE b4693 0.22 -0.4
1,203,880 - aaaE b4693 0.22 +0.8
1,203,891 + aaaE b4693 0.23 -2.1
1,204,010 + aaaE b4693 0.34 +0.0
1,204,018 - aaaE b4693 0.34 -0.4
1,204,078 - aaaE b4693 0.40 -0.8
1,204,084 + aaaE b4693 0.40 -0.4
1,204,196 + aaaE b4693 0.50 -0.4
1,204,204 - aaaE b4693 0.51 +1.1
1,204,237 - aaaE b4693 0.54 +0.5

Or see this region's nucleotide sequence