Strain Fitness in Pseudomonas putida KT2440 around PP_4917

Experiment: D-Glucose (C) with 20AA_mix_minus_Gly

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_4915 and PP_4916 are separated by 35 nucleotidesPP_4916 and PP_4917 are separated by 131 nucleotidesPP_4917 and PP_4918 are separated by 85 nucleotidesPP_4918 and PP_4919 overlap by 10 nucleotides PP_4915: PP_4915 - DNA topoisomerase IV subunit B, at 5,587,243 to 5,589,147 _4915 PP_4916: PP_4916 - putative esterase, at 5,589,183 to 5,589,791 _4916 PP_4917: PP_4917 - 3',5'-cyclic-nucleotide phosphodiesterase, at 5,589,923 to 5,590,723 _4917 PP_4918: PP_4918 - conserved protein of unknown function, at 5,590,809 to 5,591,261 _4918 PP_4919: PP_4919 - ADP-ribose/sugar pyrophosphatase, at 5,591,252 to 5,591,881 _4919 Position (kb) 5589 5590 5591Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5589.212 kb on - strandat 5589.322 kb on + strand, within PP_4916at 5589.323 kb on - strand, within PP_4916at 5589.466 kb on + strand, within PP_4916at 5589.466 kb on + strand, within PP_4916at 5589.574 kb on + strand, within PP_4916at 5589.574 kb on + strand, within PP_4916at 5589.574 kb on + strand, within PP_4916at 5589.574 kb on + strand, within PP_4916at 5589.574 kb on + strand, within PP_4916at 5589.574 kb on + strand, within PP_4916at 5589.575 kb on - strand, within PP_4916at 5589.575 kb on - strand, within PP_4916at 5589.770 kb on + strandat 5589.771 kb on - strandat 5589.771 kb on - strandat 5589.772 kb on + strandat 5589.772 kb on + strandat 5589.772 kb on + strandat 5589.772 kb on + strandat 5589.772 kb on + strandat 5589.773 kb on - strandat 5589.825 kb on - strandat 5589.927 kb on + strandat 5590.151 kb on + strand, within PP_4917at 5590.152 kb on - strand, within PP_4917at 5590.152 kb on - strand, within PP_4917at 5590.163 kb on + strand, within PP_4917at 5590.164 kb on - strand, within PP_4917at 5590.164 kb on - strand, within PP_4917at 5590.186 kb on + strand, within PP_4917at 5590.518 kb on + strand, within PP_4917at 5590.518 kb on + strand, within PP_4917at 5590.518 kb on + strand, within PP_4917at 5590.519 kb on - strand, within PP_4917at 5590.519 kb on - strand, within PP_4917at 5590.519 kb on - strand, within PP_4917at 5590.519 kb on - strand, within PP_4917at 5590.519 kb on - strand, within PP_4917at 5590.519 kb on - strand, within PP_4917at 5590.756 kb on + strandat 5590.756 kb on + strandat 5590.757 kb on - strandat 5590.757 kb on - strandat 5590.757 kb on - strandat 5590.927 kb on + strand, within PP_4918at 5590.927 kb on + strand, within PP_4918at 5590.928 kb on - strand, within PP_4918at 5590.928 kb on - strand, within PP_4918at 5590.990 kb on + strand, within PP_4918at 5590.990 kb on + strand, within PP_4918at 5590.990 kb on + strand, within PP_4918at 5590.991 kb on - strand, within PP_4918at 5591.063 kb on + strand, within PP_4918at 5591.064 kb on - strand, within PP_4918at 5591.064 kb on - strand, within PP_4918at 5591.064 kb on - strand, within PP_4918at 5591.064 kb on - strand, within PP_4918at 5591.065 kb on + strand, within PP_4918at 5591.066 kb on - strand, within PP_4918at 5591.066 kb on - strand, within PP_4918at 5591.188 kb on + strand, within PP_4918at 5591.188 kb on + strandat 5591.188 kb on + strand, within PP_4918at 5591.188 kb on + strand, within PP_4918at 5591.189 kb on - strand, within PP_4918at 5591.189 kb on - strand, within PP_4918at 5591.189 kb on - strand, within PP_4918at 5591.189 kb on - strand, within PP_4918at 5591.189 kb on - strand, within PP_4918at 5591.189 kb on - strand, within PP_4918at 5591.189 kb on - strand, within PP_4918at 5591.189 kb on - strand, within PP_4918at 5591.263 kb on + strandat 5591.263 kb on + strandat 5591.264 kb on - strandat 5591.264 kb on - strandat 5591.264 kb on - strandat 5591.264 kb on - strandat 5591.271 kb on - strandat 5591.378 kb on + strand, within PP_4919at 5591.379 kb on - strand, within PP_4919at 5591.463 kb on + strand, within PP_4919at 5591.463 kb on + strand, within PP_4919at 5591.463 kb on + strand, within PP_4919at 5591.464 kb on - strand, within PP_4919at 5591.464 kb on - strand, within PP_4919at 5591.464 kb on - strand, within PP_4919

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C) with 20AA_mix_minus_Gly
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5,589,212 - +0.0
5,589,322 + PP_4916 0.23 +2.2
5,589,323 - PP_4916 0.23 +2.0
5,589,466 + PP_4916 0.46 +0.1
5,589,466 + PP_4916 0.46 -0.3
5,589,574 + PP_4916 0.64 +0.3
5,589,574 + PP_4916 0.64 +0.6
5,589,574 + PP_4916 0.64 +0.7
5,589,574 + PP_4916 0.64 -2.2
5,589,574 + PP_4916 0.64 +0.0
5,589,574 + PP_4916 0.64 +0.5
5,589,575 - PP_4916 0.64 +0.8
5,589,575 - PP_4916 0.64 -0.6
5,589,770 + +0.1
5,589,771 - +1.0
5,589,771 - -2.0
5,589,772 + -0.7
5,589,772 + -0.1
5,589,772 + -0.0
5,589,772 + +1.2
5,589,772 + +0.1
5,589,773 - +0.5
5,589,825 - +1.9
5,589,927 + +0.0
5,590,151 + PP_4917 0.28 +1.0
5,590,152 - PP_4917 0.29 -1.4
5,590,152 - PP_4917 0.29 -1.9
5,590,163 + PP_4917 0.30 -1.1
5,590,164 - PP_4917 0.30 -1.7
5,590,164 - PP_4917 0.30 +0.5
5,590,186 + PP_4917 0.33 -0.4
5,590,518 + PP_4917 0.74 +0.3
5,590,518 + PP_4917 0.74 -2.3
5,590,518 + PP_4917 0.74 -2.4
5,590,519 - PP_4917 0.74 -0.7
5,590,519 - PP_4917 0.74 +0.4
5,590,519 - PP_4917 0.74 +2.3
5,590,519 - PP_4917 0.74 -3.4
5,590,519 - PP_4917 0.74 -1.4
5,590,519 - PP_4917 0.74 +0.9
5,590,756 + -0.3
5,590,756 + -0.1
5,590,757 - +0.1
5,590,757 - +0.6
5,590,757 - -0.5
5,590,927 + PP_4918 0.26 -0.1
5,590,927 + PP_4918 0.26 -1.6
5,590,928 - PP_4918 0.26 +0.4
5,590,928 - PP_4918 0.26 -1.6
5,590,990 + PP_4918 0.40 +0.2
5,590,990 + PP_4918 0.40 +0.2
5,590,990 + PP_4918 0.40 -0.6
5,590,991 - PP_4918 0.40 +0.3
5,591,063 + PP_4918 0.56 +1.0
5,591,064 - PP_4918 0.56 +0.0
5,591,064 - PP_4918 0.56 +2.0
5,591,064 - PP_4918 0.56 -0.2
5,591,064 - PP_4918 0.56 +0.5
5,591,065 + PP_4918 0.57 +0.4
5,591,066 - PP_4918 0.57 -0.5
5,591,066 - PP_4918 0.57 -1.2
5,591,188 + PP_4918 0.84 +0.4
5,591,188 + +0.3
5,591,188 + PP_4918 0.84 +0.3
5,591,188 + PP_4918 0.84 -0.8
5,591,189 - PP_4918 0.84 +0.5
5,591,189 - PP_4918 0.84 -1.3
5,591,189 - PP_4918 0.84 +1.1
5,591,189 - PP_4918 0.84 -0.2
5,591,189 - PP_4918 0.84 -0.4
5,591,189 - PP_4918 0.84 +0.2
5,591,189 - PP_4918 0.84 -0.3
5,591,189 - PP_4918 0.84 -0.4
5,591,263 + +0.6
5,591,263 + -0.3
5,591,264 - +0.4
5,591,264 - -0.2
5,591,264 - -0.1
5,591,264 - +0.8
5,591,271 - -0.5
5,591,378 + PP_4919 0.20 -0.6
5,591,379 - PP_4919 0.20 +1.0
5,591,463 + PP_4919 0.33 -0.6
5,591,463 + PP_4919 0.33 -0.7
5,591,463 + PP_4919 0.33 +0.3
5,591,464 - PP_4919 0.34 +0.1
5,591,464 - PP_4919 0.34 -0.6
5,591,464 - PP_4919 0.34 -0.5

Or see this region's nucleotide sequence