Experiment: D-Glucose (C) with 20AA_mix_minus_Cys
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_1050 and PP_1051 overlap by 43 nucleotides PP_1051 and PP_1052 overlap by 4 nucleotides PP_1052 and PP_1053 overlap by 16 nucleotides PP_1053 and PP_1054 overlap by 4 nucleotides PP_1054 and PP_1055 are separated by 14 nucleotides
PP_1050: PP_1050 - Type II secretion pathway protein XcpU, at 1,200,804 to 1,201,235
_1050
PP_1051: PP_1051 - Type II secretion pathway protein XcpV, at 1,201,193 to 1,201,600
_1051
PP_1052: PP_1052 - Type II secretion pathway protein XcpW, at 1,201,597 to 1,202,187
_1052
PP_1053: PP_1053 - Type II secretion pathway protein XcpY, at 1,202,172 to 1,203,260
_1053
PP_1054: PP_1054 - Type II secretion pathway protein XcpZ, at 1,203,257 to 1,203,643
_1054
PP_1055: PP_1055 - Type II secretion pathway protein GspN, at 1,203,658 to 1,204,302
_1055
Position (kb) 1202
1203
1204 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1201.275 kb on + strand, within PP_1051 at 1201.320 kb on + strand, within PP_1051 at 1201.321 kb on - strand, within PP_1051 at 1201.418 kb on + strand, within PP_1051 at 1201.419 kb on - strand, within PP_1051 at 1201.574 kb on + strand at 1201.575 kb on - strand at 1201.575 kb on - strand at 1201.575 kb on - strand at 1201.575 kb on - strand at 1201.984 kb on + strand, within PP_1052 at 1202.149 kb on + strand at 1202.149 kb on + strand at 1202.149 kb on + strand at 1202.150 kb on - strand at 1202.150 kb on - strand at 1202.208 kb on - strand at 1202.560 kb on + strand, within PP_1053 at 1202.646 kb on + strand, within PP_1053 at 1202.647 kb on - strand at 1202.771 kb on - strand, within PP_1053 at 1203.023 kb on - strand, within PP_1053 at 1203.023 kb on - strand, within PP_1053 at 1203.041 kb on + strand, within PP_1053 at 1203.041 kb on + strand, within PP_1053 at 1203.042 kb on - strand, within PP_1053 at 1203.042 kb on - strand, within PP_1053 at 1203.053 kb on - strand, within PP_1053 at 1203.185 kb on + strand at 1203.438 kb on + strand, within PP_1054 at 1203.438 kb on + strand, within PP_1054 at 1203.439 kb on - strand, within PP_1054 at 1203.671 kb on + strand at 1203.671 kb on + strand at 1203.671 kb on + strand at 1204.050 kb on - strand, within PP_1055 at 1204.050 kb on - strand, within PP_1055
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) with 20AA_mix_minus_Cys remove 1,201,275 + PP_1051 0.20 -0.9 1,201,320 + PP_1051 0.31 -0.4 1,201,321 - PP_1051 0.31 +0.8 1,201,418 + PP_1051 0.55 +0.4 1,201,419 - PP_1051 0.55 +1.3 1,201,574 + +0.4 1,201,575 - +0.9 1,201,575 - -1.3 1,201,575 - -1.0 1,201,575 - +0.7 1,201,984 + PP_1052 0.65 -1.6 1,202,149 + -1.5 1,202,149 + +1.9 1,202,149 + -1.0 1,202,150 - +1.1 1,202,150 - +0.1 1,202,208 - +0.0 1,202,560 + PP_1053 0.36 -1.4 1,202,646 + PP_1053 0.44 -0.1 1,202,647 - +1.9 1,202,771 - PP_1053 0.55 -0.5 1,203,023 - PP_1053 0.78 +0.0 1,203,023 - PP_1053 0.78 -1.4 1,203,041 + PP_1053 0.80 +1.0 1,203,041 + PP_1053 0.80 +0.2 1,203,042 - PP_1053 0.80 -2.9 1,203,042 - PP_1053 0.80 +0.7 1,203,053 - PP_1053 0.81 -3.3 1,203,185 + -1.8 1,203,438 + PP_1054 0.47 -0.5 1,203,438 + PP_1054 0.47 -3.0 1,203,439 - PP_1054 0.47 -3.2 1,203,671 + +1.0 1,203,671 + -0.3 1,203,671 + +0.7 1,204,050 - PP_1055 0.61 -1.6 1,204,050 - PP_1055 0.61 -1.0
Or see this region's nucleotide sequence