Strain Fitness in Agrobacterium fabrum C58 around Atu6015

Experiment: R2A pH 5.5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu6014 and Atu8062 are separated by 16 nucleotidesAtu8062 and Atu8054 are separated by 552 nucleotidesAtu8054 and Atu6015 are separated by 7 nucleotidesAtu6015 and Atu6016 are separated by 507 nucleotides Atu6014: Atu6014 - 6b protein, at 21,618 to 22,241 Atu6014 Atu8062: Atu8062 - hypothetical protein, at 22,258 to 22,563 Atu8062 Atu8054: Atu8054 - hypothetical protein, at 23,116 to 23,223 Atu8054 Atu6015: Atu6015 - D-nopaline dehydrogenase, at 23,231 to 24,472 Atu6015 Atu6016: Atu6016 - ornithine cyclodeaminase, at 24,980 to 26,095 Atu6016 Position (kb) 23 24 25Strain fitness (log2 ratio) -2 -1 0 1at 22.314 kb on - strand, within Atu8062at 22.316 kb on + strand, within Atu8062at 22.327 kb on - strand, within Atu8062at 22.345 kb on - strand, within Atu8062at 22.373 kb on + strand, within Atu8062at 22.378 kb on + strand, within Atu8062at 22.378 kb on + strand, within Atu8062at 22.378 kb on + strand, within Atu8062at 22.378 kb on + strand, within Atu8062at 22.411 kb on - strand, within Atu8062at 22.434 kb on + strand, within Atu8062at 22.442 kb on - strand, within Atu8062at 22.472 kb on + strand, within Atu8062at 22.479 kb on - strand, within Atu8062at 22.481 kb on - strand, within Atu8062at 22.486 kb on - strand, within Atu8062at 22.501 kb on + strand, within Atu8062at 22.530 kb on - strand, within Atu8062at 22.537 kb on + strandat 22.537 kb on + strandat 22.547 kb on + strandat 22.569 kb on + strandat 22.576 kb on + strandat 22.576 kb on - strandat 22.603 kb on - strandat 22.605 kb on + strandat 22.621 kb on - strandat 22.621 kb on - strandat 22.652 kb on + strandat 22.652 kb on + strandat 22.676 kb on + strandat 22.743 kb on + strandat 22.831 kb on - strandat 22.932 kb on + strandat 22.932 kb on + strandat 22.940 kb on - strandat 22.940 kb on - strandat 22.940 kb on - strandat 22.940 kb on - strandat 22.940 kb on - strandat 22.942 kb on + strandat 22.950 kb on - strandat 23.206 kb on - strand, within Atu8054at 23.220 kb on - strandat 23.300 kb on - strandat 23.300 kb on - strandat 23.378 kb on + strand, within Atu6015at 23.379 kb on - strand, within Atu6015at 23.425 kb on + strand, within Atu6015at 23.425 kb on + strand, within Atu6015at 23.461 kb on + strand, within Atu6015at 23.469 kb on - strand, within Atu6015at 23.469 kb on - strand, within Atu6015at 23.469 kb on - strand, within Atu6015at 23.469 kb on - strand, within Atu6015at 23.483 kb on - strand, within Atu6015at 23.491 kb on + strand, within Atu6015at 23.500 kb on - strand, within Atu6015at 23.506 kb on + strand, within Atu6015at 23.506 kb on + strand, within Atu6015at 23.514 kb on - strand, within Atu6015at 23.514 kb on - strand, within Atu6015at 23.514 kb on - strand, within Atu6015at 23.514 kb on - strand, within Atu6015at 23.562 kb on - strand, within Atu6015at 23.572 kb on - strand, within Atu6015at 23.715 kb on - strand, within Atu6015at 23.723 kb on + strand, within Atu6015at 23.767 kb on + strand, within Atu6015at 23.767 kb on - strand, within Atu6015at 23.775 kb on - strand, within Atu6015at 23.775 kb on - strand, within Atu6015at 23.785 kb on - strand, within Atu6015at 23.785 kb on - strand, within Atu6015at 23.810 kb on - strand, within Atu6015at 23.846 kb on + strand, within Atu6015at 23.874 kb on + strand, within Atu6015at 23.879 kb on - strand, within Atu6015at 23.907 kb on - strand, within Atu6015at 23.926 kb on + strand, within Atu6015at 24.001 kb on + strand, within Atu6015at 24.001 kb on + strand, within Atu6015at 24.057 kb on + strand, within Atu6015at 24.057 kb on + strand, within Atu6015at 24.076 kb on + strand, within Atu6015at 24.085 kb on - strand, within Atu6015at 24.096 kb on + strand, within Atu6015at 24.128 kb on - strand, within Atu6015at 24.128 kb on - strand, within Atu6015at 24.147 kb on + strand, within Atu6015at 24.160 kb on - strand, within Atu6015at 24.160 kb on - strand, within Atu6015at 24.170 kb on + strand, within Atu6015at 24.174 kb on + strand, within Atu6015at 24.178 kb on - strand, within Atu6015at 24.178 kb on - strand, within Atu6015at 24.179 kb on + strand, within Atu6015at 24.189 kb on + strand, within Atu6015at 24.192 kb on - strand, within Atu6015at 24.192 kb on - strand, within Atu6015at 24.214 kb on + strand, within Atu6015at 24.263 kb on + strand, within Atu6015at 24.264 kb on - strand, within Atu6015at 24.267 kb on - strand, within Atu6015at 24.269 kb on - strand, within Atu6015at 24.279 kb on - strand, within Atu6015at 24.296 kb on + strand, within Atu6015at 24.311 kb on + strand, within Atu6015at 24.326 kb on - strand, within Atu6015at 24.387 kb on + strandat 24.395 kb on - strandat 24.395 kb on - strandat 24.472 kb on + strandat 24.546 kb on - strandat 24.577 kb on + strandat 24.636 kb on - strandat 24.638 kb on - strandat 24.638 kb on - strandat 24.679 kb on - strandat 24.694 kb on + strandat 24.750 kb on + strandat 24.758 kb on - strandat 24.758 kb on - strandat 24.767 kb on + strandat 24.801 kb on + strandat 24.801 kb on - strandat 24.807 kb on + strandat 24.825 kb on - strandat 24.889 kb on - strandat 24.916 kb on - strandat 24.935 kb on - strandat 24.939 kb on + strandat 24.940 kb on - strandat 24.947 kb on - strandat 25.008 kb on + strandat 25.042 kb on + strandat 25.042 kb on + strandat 25.073 kb on + strandat 25.073 kb on + strandat 25.073 kb on + strandat 25.078 kb on + strandat 25.081 kb on - strandat 25.156 kb on - strand, within Atu6016at 25.187 kb on + strand, within Atu6016at 25.195 kb on - strand, within Atu6016at 25.195 kb on - strand, within Atu6016at 25.195 kb on - strand, within Atu6016at 25.205 kb on - strand, within Atu6016at 25.232 kb on - strand, within Atu6016at 25.232 kb on - strand, within Atu6016at 25.272 kb on + strand, within Atu6016at 25.301 kb on + strand, within Atu6016at 25.309 kb on - strand, within Atu6016at 25.328 kb on - strand, within Atu6016at 25.330 kb on + strand, within Atu6016at 25.330 kb on + strand, within Atu6016at 25.330 kb on + strand, within Atu6016at 25.330 kb on + strand, within Atu6016at 25.374 kb on - strand, within Atu6016at 25.374 kb on - strand, within Atu6016at 25.383 kb on - strand, within Atu6016at 25.388 kb on + strand, within Atu6016at 25.401 kb on - strand, within Atu6016at 25.411 kb on + strand, within Atu6016at 25.425 kb on + strand, within Atu6016at 25.425 kb on + strand, within Atu6016at 25.464 kb on - strand, within Atu6016at 25.466 kb on + strand, within Atu6016

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A pH 5.5
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22,314 - Atu8062 0.18 +0.5
22,316 + Atu8062 0.19 -0.8
22,327 - Atu8062 0.23 -1.7
22,345 - Atu8062 0.28 -0.9
22,373 + Atu8062 0.38 -0.4
22,378 + Atu8062 0.39 -0.3
22,378 + Atu8062 0.39 -0.8
22,378 + Atu8062 0.39 +1.2
22,378 + Atu8062 0.39 -0.2
22,411 - Atu8062 0.50 -0.4
22,434 + Atu8062 0.58 -0.5
22,442 - Atu8062 0.60 -1.5
22,472 + Atu8062 0.70 -0.8
22,479 - Atu8062 0.72 -0.4
22,481 - Atu8062 0.73 -0.4
22,486 - Atu8062 0.75 -0.5
22,501 + Atu8062 0.79 +0.2
22,530 - Atu8062 0.89 -1.3
22,537 + +0.1
22,537 + -2.2
22,547 + -0.2
22,569 + -0.1
22,576 + -0.8
22,576 - -0.8
22,603 - -0.5
22,605 + +0.3
22,621 - -1.9
22,621 - -0.8
22,652 + -0.2
22,652 + -0.1
22,676 + -0.0
22,743 + +0.1
22,831 - -0.8
22,932 + -0.6
22,932 + -1.2
22,940 - -0.4
22,940 - +0.0
22,940 - -0.6
22,940 - -0.2
22,940 - -0.6
22,942 + -0.3
22,950 - -0.8
23,206 - Atu8054 0.83 +0.1
23,220 - -0.6
23,300 - -0.8
23,300 - -0.7
23,378 + Atu6015 0.12 -0.5
23,379 - Atu6015 0.12 +0.9
23,425 + Atu6015 0.16 +0.3
23,425 + Atu6015 0.16 -0.9
23,461 + Atu6015 0.19 -1.0
23,469 - Atu6015 0.19 -1.1
23,469 - Atu6015 0.19 +0.0
23,469 - Atu6015 0.19 +0.3
23,469 - Atu6015 0.19 -0.2
23,483 - Atu6015 0.20 -0.3
23,491 + Atu6015 0.21 +0.3
23,500 - Atu6015 0.22 -1.5
23,506 + Atu6015 0.22 -1.3
23,506 + Atu6015 0.22 -0.3
23,514 - Atu6015 0.23 -0.2
23,514 - Atu6015 0.23 +0.3
23,514 - Atu6015 0.23 +0.3
23,514 - Atu6015 0.23 -0.7
23,562 - Atu6015 0.27 -2.1
23,572 - Atu6015 0.27 -0.2
23,715 - Atu6015 0.39 -0.1
23,723 + Atu6015 0.40 -0.3
23,767 + Atu6015 0.43 -1.9
23,767 - Atu6015 0.43 +0.6
23,775 - Atu6015 0.44 -0.1
23,775 - Atu6015 0.44 +0.3
23,785 - Atu6015 0.45 -0.4
23,785 - Atu6015 0.45 -0.1
23,810 - Atu6015 0.47 +1.0
23,846 + Atu6015 0.50 -0.4
23,874 + Atu6015 0.52 -0.1
23,879 - Atu6015 0.52 -0.5
23,907 - Atu6015 0.54 -0.8
23,926 + Atu6015 0.56 +0.2
24,001 + Atu6015 0.62 -0.3
24,001 + Atu6015 0.62 -0.6
24,057 + Atu6015 0.67 -0.1
24,057 + Atu6015 0.67 +0.1
24,076 + Atu6015 0.68 +0.8
24,085 - Atu6015 0.69 +0.0
24,096 + Atu6015 0.70 -1.9
24,128 - Atu6015 0.72 +0.8
24,128 - Atu6015 0.72 -1.0
24,147 + Atu6015 0.74 -0.4
24,160 - Atu6015 0.75 +0.1
24,160 - Atu6015 0.75 -0.4
24,170 + Atu6015 0.76 -1.0
24,174 + Atu6015 0.76 -0.4
24,178 - Atu6015 0.76 +0.5
24,178 - Atu6015 0.76 -1.2
24,179 + Atu6015 0.76 -0.1
24,189 + Atu6015 0.77 -0.5
24,192 - Atu6015 0.77 -0.6
24,192 - Atu6015 0.77 +0.6
24,214 + Atu6015 0.79 +0.2
24,263 + Atu6015 0.83 -1.4
24,264 - Atu6015 0.83 -0.0
24,267 - Atu6015 0.83 -1.2
24,269 - Atu6015 0.84 -0.8
24,279 - Atu6015 0.84 -0.3
24,296 + Atu6015 0.86 -0.4
24,311 + Atu6015 0.87 -0.5
24,326 - Atu6015 0.88 -0.3
24,387 + -0.1
24,395 - -0.0
24,395 - +0.5
24,472 + -1.5
24,546 - -0.8
24,577 + -0.3
24,636 - -0.9
24,638 - -0.2
24,638 - -0.8
24,679 - -0.9
24,694 + -0.7
24,750 + -0.7
24,758 - -0.6
24,758 - -0.1
24,767 + -0.7
24,801 + -0.5
24,801 - +0.1
24,807 + -0.0
24,825 - -0.7
24,889 - -0.1
24,916 - -2.0
24,935 - +0.4
24,939 + +1.6
24,940 - +0.2
24,947 - -0.0
25,008 + -0.0
25,042 + -0.5
25,042 + -0.4
25,073 + -0.7
25,073 + -0.8
25,073 + -0.1
25,078 + -0.3
25,081 - -0.1
25,156 - Atu6016 0.16 -0.5
25,187 + Atu6016 0.19 -0.1
25,195 - Atu6016 0.19 +0.4
25,195 - Atu6016 0.19 +1.5
25,195 - Atu6016 0.19 +0.1
25,205 - Atu6016 0.20 -0.6
25,232 - Atu6016 0.23 -0.4
25,232 - Atu6016 0.23 -0.1
25,272 + Atu6016 0.26 -0.8
25,301 + Atu6016 0.29 -2.5
25,309 - Atu6016 0.29 +0.1
25,328 - Atu6016 0.31 +0.9
25,330 + Atu6016 0.31 +0.1
25,330 + Atu6016 0.31 +0.3
25,330 + Atu6016 0.31 -0.3
25,330 + Atu6016 0.31 -0.1
25,374 - Atu6016 0.35 -0.7
25,374 - Atu6016 0.35 -0.1
25,383 - Atu6016 0.36 -0.4
25,388 + Atu6016 0.37 +0.0
25,401 - Atu6016 0.38 +0.3
25,411 + Atu6016 0.39 +1.0
25,425 + Atu6016 0.40 +0.1
25,425 + Atu6016 0.40 +0.1
25,464 - Atu6016 0.43 -0.0
25,466 + Atu6016 0.44 +0.1

Or see this region's nucleotide sequence