Experiment: R2A pH 5.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu6009 and Atu6010 are separated by 504 nucleotides Atu6010 and Atu6011 are separated by 337 nucleotides
Atu6009: Atu6009 - indole-3-lactate synthase, at 13,461 to 14,126
Atu6009
Atu6010: Atu6010 - indole acetamide hydrolase, at 14,631 to 16,034
Atu6010
Atu6011: Atu6011 - tryptophan 2-monooxygenase, at 16,372 to 18,639
Atu6011
Position (kb) 14
15
16
17 Strain fitness (log2 ratio) -2
-1
0
1 at 13.666 kb on - strand, within Atu6009 at 13.818 kb on + strand, within Atu6009 at 13.838 kb on - strand, within Atu6009 at 13.838 kb on - strand, within Atu6009 at 13.838 kb on - strand, within Atu6009 at 14.055 kb on + strand, within Atu6009 at 14.055 kb on + strand, within Atu6009 at 14.093 kb on - strand at 14.101 kb on - strand at 14.108 kb on + strand at 14.142 kb on + strand at 14.142 kb on + strand at 14.150 kb on - strand at 14.155 kb on - strand at 14.360 kb on + strand at 14.360 kb on - strand at 14.366 kb on + strand at 14.368 kb on - strand at 14.368 kb on - strand at 14.368 kb on - strand at 14.541 kb on + strand at 14.623 kb on + strand at 14.632 kb on - strand at 14.674 kb on + strand at 14.705 kb on + strand at 14.713 kb on - strand at 14.714 kb on + strand at 14.714 kb on - strand at 14.722 kb on - strand at 14.755 kb on + strand at 14.755 kb on + strand at 14.755 kb on + strand at 14.755 kb on + strand at 14.755 kb on + strand at 14.756 kb on + strand at 14.756 kb on + strand at 14.763 kb on - strand at 14.763 kb on - strand at 14.763 kb on - strand at 14.763 kb on - strand at 14.763 kb on - strand at 14.763 kb on - strand at 14.763 kb on - strand at 14.764 kb on - strand at 14.775 kb on + strand, within Atu6010 at 14.775 kb on + strand, within Atu6010 at 14.783 kb on - strand, within Atu6010 at 14.783 kb on - strand, within Atu6010 at 14.787 kb on - strand, within Atu6010 at 14.789 kb on + strand, within Atu6010 at 14.789 kb on + strand, within Atu6010 at 14.810 kb on - strand, within Atu6010 at 14.826 kb on + strand, within Atu6010 at 14.834 kb on - strand, within Atu6010 at 14.843 kb on + strand, within Atu6010 at 14.856 kb on + strand, within Atu6010 at 14.871 kb on + strand, within Atu6010 at 14.871 kb on + strand, within Atu6010 at 14.871 kb on + strand, within Atu6010 at 14.871 kb on + strand, within Atu6010 at 14.871 kb on + strand, within Atu6010 at 14.879 kb on - strand, within Atu6010 at 14.879 kb on - strand, within Atu6010 at 14.879 kb on - strand, within Atu6010 at 14.879 kb on - strand, within Atu6010 at 14.879 kb on - strand, within Atu6010 at 14.886 kb on - strand, within Atu6010 at 14.886 kb on - strand, within Atu6010 at 14.898 kb on + strand, within Atu6010 at 14.906 kb on - strand, within Atu6010 at 14.915 kb on + strand, within Atu6010 at 14.943 kb on - strand, within Atu6010 at 14.944 kb on - strand, within Atu6010 at 14.959 kb on + strand, within Atu6010 at 14.966 kb on + strand, within Atu6010 at 14.966 kb on + strand, within Atu6010 at 14.966 kb on - strand, within Atu6010 at 14.974 kb on - strand, within Atu6010 at 14.979 kb on + strand, within Atu6010 at 15.045 kb on - strand, within Atu6010 at 15.149 kb on + strand, within Atu6010 at 15.187 kb on + strand, within Atu6010 at 15.190 kb on - strand, within Atu6010 at 15.190 kb on - strand, within Atu6010 at 15.191 kb on - strand, within Atu6010 at 15.213 kb on + strand, within Atu6010 at 15.254 kb on - strand, within Atu6010 at 15.256 kb on + strand, within Atu6010 at 15.271 kb on + strand, within Atu6010 at 15.279 kb on - strand, within Atu6010 at 15.279 kb on - strand, within Atu6010 at 15.303 kb on - strand, within Atu6010 at 15.319 kb on + strand, within Atu6010 at 15.383 kb on - strand, within Atu6010 at 15.417 kb on + strand, within Atu6010 at 15.417 kb on + strand, within Atu6010 at 15.417 kb on + strand, within Atu6010 at 15.417 kb on + strand, within Atu6010 at 15.425 kb on - strand, within Atu6010 at 15.427 kb on + strand, within Atu6010 at 15.430 kb on - strand, within Atu6010 at 15.430 kb on - strand, within Atu6010 at 15.437 kb on + strand, within Atu6010 at 15.440 kb on - strand, within Atu6010 at 15.449 kb on - strand, within Atu6010 at 15.451 kb on + strand, within Atu6010 at 15.469 kb on - strand, within Atu6010 at 15.487 kb on + strand, within Atu6010 at 15.492 kb on + strand, within Atu6010 at 15.492 kb on + strand, within Atu6010 at 15.495 kb on - strand, within Atu6010 at 15.495 kb on - strand, within Atu6010 at 15.495 kb on - strand, within Atu6010 at 15.495 kb on - strand, within Atu6010 at 15.497 kb on + strand, within Atu6010 at 15.497 kb on + strand, within Atu6010 at 15.505 kb on - strand, within Atu6010 at 15.515 kb on + strand, within Atu6010 at 15.573 kb on + strand, within Atu6010 at 15.581 kb on - strand, within Atu6010 at 15.581 kb on - strand, within Atu6010 at 15.583 kb on + strand, within Atu6010 at 15.585 kb on + strand, within Atu6010 at 15.605 kb on + strand, within Atu6010 at 15.613 kb on - strand, within Atu6010 at 15.648 kb on - strand, within Atu6010 at 15.693 kb on + strand, within Atu6010 at 15.754 kb on + strand, within Atu6010 at 15.762 kb on - strand, within Atu6010 at 15.812 kb on + strand, within Atu6010 at 15.812 kb on + strand, within Atu6010 at 15.812 kb on + strand, within Atu6010 at 15.812 kb on + strand, within Atu6010 at 15.812 kb on + strand, within Atu6010 at 15.812 kb on + strand, within Atu6010 at 15.820 kb on - strand, within Atu6010 at 15.820 kb on - strand, within Atu6010 at 15.820 kb on - strand, within Atu6010 at 15.844 kb on + strand, within Atu6010 at 15.847 kb on - strand, within Atu6010 at 15.898 kb on - strand at 15.901 kb on + strand at 15.975 kb on + strand at 15.983 kb on - strand at 15.998 kb on + strand at 15.998 kb on + strand at 16.006 kb on - strand at 16.013 kb on - strand at 16.097 kb on - strand at 16.192 kb on - strand at 16.222 kb on + strand at 16.222 kb on + strand at 16.280 kb on - strand at 16.291 kb on - strand at 16.291 kb on - strand at 16.325 kb on + strand at 16.491 kb on + strand at 16.536 kb on + strand at 16.546 kb on + strand at 16.546 kb on + strand at 16.546 kb on + strand at 16.554 kb on - strand at 16.554 kb on - strand at 16.574 kb on - strand at 16.597 kb on + strand at 16.597 kb on + strand at 16.605 kb on - strand, within Atu6011 at 16.640 kb on + strand, within Atu6011 at 16.680 kb on - strand, within Atu6011 at 16.687 kb on + strand, within Atu6011 at 16.807 kb on - strand, within Atu6011 at 16.827 kb on + strand, within Atu6011 at 16.827 kb on + strand, within Atu6011 at 16.827 kb on + strand, within Atu6011 at 16.827 kb on + strand, within Atu6011 at 16.835 kb on - strand, within Atu6011 at 16.835 kb on - strand, within Atu6011 at 16.835 kb on - strand, within Atu6011 at 16.835 kb on - strand, within Atu6011 at 16.842 kb on + strand, within Atu6011 at 16.842 kb on + strand, within Atu6011 at 16.842 kb on + strand, within Atu6011 at 16.850 kb on - strand, within Atu6011 at 16.850 kb on - strand, within Atu6011 at 16.850 kb on - strand, within Atu6011 at 16.850 kb on - strand, within Atu6011 at 16.850 kb on - strand, within Atu6011 at 16.898 kb on + strand, within Atu6011 at 16.898 kb on + strand, within Atu6011 at 16.898 kb on + strand, within Atu6011 at 16.898 kb on + strand, within Atu6011 at 16.898 kb on + strand, within Atu6011 at 16.903 kb on + strand, within Atu6011 at 16.903 kb on + strand, within Atu6011 at 16.903 kb on + strand, within Atu6011 at 16.903 kb on + strand, within Atu6011 at 16.906 kb on - strand, within Atu6011 at 16.906 kb on - strand, within Atu6011 at 16.906 kb on - strand, within Atu6011 at 16.910 kb on + strand, within Atu6011 at 16.910 kb on + strand, within Atu6011 at 16.911 kb on - strand, within Atu6011 at 16.911 kb on - strand, within Atu6011 at 16.911 kb on - strand, within Atu6011 at 16.912 kb on + strand, within Atu6011 at 16.918 kb on - strand, within Atu6011 at 16.918 kb on - strand, within Atu6011 at 16.918 kb on - strand, within Atu6011 at 16.918 kb on - strand, within Atu6011 at 16.920 kb on + strand, within Atu6011 at 16.956 kb on + strand, within Atu6011 at 16.957 kb on - strand, within Atu6011 at 16.962 kb on + strand, within Atu6011 at 16.991 kb on + strand, within Atu6011 at 17.001 kb on + strand, within Atu6011 at 17.009 kb on - strand, within Atu6011
Per-strain Table
Position Strand Gene LocusTag Fraction R2A pH 5.5 remove 13,666 - Atu6009 0.31 -0.9 13,818 + Atu6009 0.54 -0.1 13,838 - Atu6009 0.57 -0.9 13,838 - Atu6009 0.57 -0.5 13,838 - Atu6009 0.57 +1.7 14,055 + Atu6009 0.89 -0.5 14,055 + Atu6009 0.89 -0.5 14,093 - -0.3 14,101 - -0.7 14,108 + -0.4 14,142 + -0.6 14,142 + -0.9 14,150 - +0.2 14,155 - +0.1 14,360 + +0.2 14,360 - -1.3 14,366 + -1.0 14,368 - -0.7 14,368 - -0.4 14,368 - -0.6 14,541 + -1.3 14,623 + -0.8 14,632 - -0.9 14,674 + -0.5 14,705 + -0.3 14,713 - -0.1 14,714 + -0.7 14,714 - +0.3 14,722 - -0.7 14,755 + -0.6 14,755 + -0.1 14,755 + -0.7 14,755 + -0.3 14,755 + -1.0 14,756 + -1.4 14,756 + -0.7 14,763 - +0.8 14,763 - -0.1 14,763 - -1.2 14,763 - -0.6 14,763 - -0.2 14,763 - -1.3 14,763 - +0.0 14,764 - -1.4 14,775 + Atu6010 0.10 -0.6 14,775 + Atu6010 0.10 -0.2 14,783 - Atu6010 0.11 +0.5 14,783 - Atu6010 0.11 -0.4 14,787 - Atu6010 0.11 +0.9 14,789 + Atu6010 0.11 -0.5 14,789 + Atu6010 0.11 -0.5 14,810 - Atu6010 0.13 -0.7 14,826 + Atu6010 0.14 +0.3 14,834 - Atu6010 0.14 +0.1 14,843 + Atu6010 0.15 -0.9 14,856 + Atu6010 0.16 -0.2 14,871 + Atu6010 0.17 +0.3 14,871 + Atu6010 0.17 +0.3 14,871 + Atu6010 0.17 +0.0 14,871 + Atu6010 0.17 -0.4 14,871 + Atu6010 0.17 -0.5 14,879 - Atu6010 0.18 +0.3 14,879 - Atu6010 0.18 -1.1 14,879 - Atu6010 0.18 -0.6 14,879 - Atu6010 0.18 -0.7 14,879 - Atu6010 0.18 -1.1 14,886 - Atu6010 0.18 -0.5 14,886 - Atu6010 0.18 -0.3 14,898 + Atu6010 0.19 +0.2 14,906 - Atu6010 0.20 +1.1 14,915 + Atu6010 0.20 +0.3 14,943 - Atu6010 0.22 +0.1 14,944 - Atu6010 0.22 -0.7 14,959 + Atu6010 0.23 -0.5 14,966 + Atu6010 0.24 -0.8 14,966 + Atu6010 0.24 +0.0 14,966 - Atu6010 0.24 -0.3 14,974 - Atu6010 0.24 -0.8 14,979 + Atu6010 0.25 -0.4 15,045 - Atu6010 0.29 +0.9 15,149 + Atu6010 0.37 -0.7 15,187 + Atu6010 0.40 +0.6 15,190 - Atu6010 0.40 +0.1 15,190 - Atu6010 0.40 +0.2 15,191 - Atu6010 0.40 +0.1 15,213 + Atu6010 0.41 +0.3 15,254 - Atu6010 0.44 -0.2 15,256 + Atu6010 0.45 +0.0 15,271 + Atu6010 0.46 +0.0 15,279 - Atu6010 0.46 +1.0 15,279 - Atu6010 0.46 -0.6 15,303 - Atu6010 0.48 -0.2 15,319 + Atu6010 0.49 +1.6 15,383 - Atu6010 0.54 -0.2 15,417 + Atu6010 0.56 -0.9 15,417 + Atu6010 0.56 +0.9 15,417 + Atu6010 0.56 +0.5 15,417 + Atu6010 0.56 +0.3 15,425 - Atu6010 0.57 -1.2 15,427 + Atu6010 0.57 -1.3 15,430 - Atu6010 0.57 -0.6 15,430 - Atu6010 0.57 -0.4 15,437 + Atu6010 0.57 -0.4 15,440 - Atu6010 0.58 -0.7 15,449 - Atu6010 0.58 +0.4 15,451 + Atu6010 0.58 -0.3 15,469 - Atu6010 0.60 -0.5 15,487 + Atu6010 0.61 -0.3 15,492 + Atu6010 0.61 +0.1 15,492 + Atu6010 0.61 +1.5 15,495 - Atu6010 0.62 +0.8 15,495 - Atu6010 0.62 +1.4 15,495 - Atu6010 0.62 +0.1 15,495 - Atu6010 0.62 -0.7 15,497 + Atu6010 0.62 +0.2 15,497 + Atu6010 0.62 +0.2 15,505 - Atu6010 0.62 -0.2 15,515 + Atu6010 0.63 +0.2 15,573 + Atu6010 0.67 -0.3 15,581 - Atu6010 0.68 -0.2 15,581 - Atu6010 0.68 -0.5 15,583 + Atu6010 0.68 -1.0 15,585 + Atu6010 0.68 +0.0 15,605 + Atu6010 0.69 +1.2 15,613 - Atu6010 0.70 -0.8 15,648 - Atu6010 0.72 +0.3 15,693 + Atu6010 0.76 -0.3 15,754 + Atu6010 0.80 -0.1 15,762 - Atu6010 0.81 -1.0 15,812 + Atu6010 0.84 +0.3 15,812 + Atu6010 0.84 -0.1 15,812 + Atu6010 0.84 -0.2 15,812 + Atu6010 0.84 -0.2 15,812 + Atu6010 0.84 -0.5 15,812 + Atu6010 0.84 -0.3 15,820 - Atu6010 0.85 -0.4 15,820 - Atu6010 0.85 -0.1 15,820 - Atu6010 0.85 -0.5 15,844 + Atu6010 0.86 +0.1 15,847 - Atu6010 0.87 -0.3 15,898 - +0.3 15,901 + -0.2 15,975 + -0.4 15,983 - -0.3 15,998 + -0.8 15,998 + -0.3 16,006 - +0.1 16,013 - -0.0 16,097 - -1.4 16,192 - -2.1 16,222 + -1.0 16,222 + -0.8 16,280 - -0.7 16,291 - -1.8 16,291 - -0.9 16,325 + -1.3 16,491 + -0.3 16,536 + +0.1 16,546 + -0.4 16,546 + +0.1 16,546 + -0.9 16,554 - -0.5 16,554 - -1.0 16,574 - -0.1 16,597 + -0.8 16,597 + -0.3 16,605 - Atu6011 0.10 -2.7 16,640 + Atu6011 0.12 +0.5 16,680 - Atu6011 0.14 -0.3 16,687 + Atu6011 0.14 -1.0 16,807 - Atu6011 0.19 -0.3 16,827 + Atu6011 0.20 -0.4 16,827 + Atu6011 0.20 -1.2 16,827 + Atu6011 0.20 -0.5 16,827 + Atu6011 0.20 -1.0 16,835 - Atu6011 0.20 -1.6 16,835 - Atu6011 0.20 -0.4 16,835 - Atu6011 0.20 -0.3 16,835 - Atu6011 0.20 -0.3 16,842 + Atu6011 0.21 -0.1 16,842 + Atu6011 0.21 -1.2 16,842 + Atu6011 0.21 -0.6 16,850 - Atu6011 0.21 +0.8 16,850 - Atu6011 0.21 -0.0 16,850 - Atu6011 0.21 +0.5 16,850 - Atu6011 0.21 -0.4 16,850 - Atu6011 0.21 -0.5 16,898 + Atu6011 0.23 +1.3 16,898 + Atu6011 0.23 -0.0 16,898 + Atu6011 0.23 -0.8 16,898 + Atu6011 0.23 -0.3 16,898 + Atu6011 0.23 -0.1 16,903 + Atu6011 0.23 -1.4 16,903 + Atu6011 0.23 -0.1 16,903 + Atu6011 0.23 +0.4 16,903 + Atu6011 0.23 -0.7 16,906 - Atu6011 0.24 -0.3 16,906 - Atu6011 0.24 -0.8 16,906 - Atu6011 0.24 +0.2 16,910 + Atu6011 0.24 -0.1 16,910 + Atu6011 0.24 -0.1 16,911 - Atu6011 0.24 -0.2 16,911 - Atu6011 0.24 -0.5 16,911 - Atu6011 0.24 -0.2 16,912 + Atu6011 0.24 -0.4 16,918 - Atu6011 0.24 +0.1 16,918 - Atu6011 0.24 +0.1 16,918 - Atu6011 0.24 -1.0 16,918 - Atu6011 0.24 -1.1 16,920 + Atu6011 0.24 -0.6 16,956 + Atu6011 0.26 +0.8 16,957 - Atu6011 0.26 -0.7 16,962 + Atu6011 0.26 +0.1 16,991 + Atu6011 0.27 -0.0 17,001 + Atu6011 0.28 +0.4 17,009 - Atu6011 0.28 -1.0
Or see this region's nucleotide sequence