Experiment: R2A pH 5.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3131 and Atu3132 are separated by 2 nucleotides Atu3132 and Atu3133 are separated by 4 nucleotides Atu3133 and Atu3134 are separated by 212 nucleotides
Atu3131: Atu3131 - sugar ABC transporter ATPase, at 139,071 to 140,171
Atu3131
Atu3132: Atu3132 - sugar ABC transporter permease, at 140,174 to 141,058
Atu3132
Atu3133: Atu3133 - sugar ABC transporter permease, at 141,063 to 141,944
Atu3133
Atu3134: Atu3134 - AraC family transcriptional regulator, at 142,157 to 143,083
Atu3134
Position (kb) 141
142 Strain fitness (log2 ratio) -2
-1
0
1 at 140.067 kb on - strand at 140.116 kb on + strand at 140.116 kb on + strand at 140.116 kb on + strand at 140.131 kb on + strand at 140.237 kb on + strand at 140.302 kb on - strand, within Atu3132 at 140.357 kb on - strand, within Atu3132 at 140.423 kb on - strand, within Atu3132 at 140.451 kb on + strand, within Atu3132 at 140.482 kb on - strand, within Atu3132 at 140.580 kb on + strand, within Atu3132 at 140.616 kb on - strand, within Atu3132 at 140.638 kb on - strand, within Atu3132 at 140.680 kb on - strand, within Atu3132 at 140.734 kb on - strand, within Atu3132 at 140.734 kb on - strand, within Atu3132 at 140.747 kb on + strand, within Atu3132 at 140.850 kb on - strand, within Atu3132 at 140.928 kb on + strand, within Atu3132 at 140.950 kb on + strand, within Atu3132 at 140.986 kb on - strand at 140.988 kb on + strand at 141.001 kb on + strand at 141.035 kb on + strand at 141.069 kb on - strand at 141.207 kb on + strand, within Atu3133 at 141.210 kb on - strand, within Atu3133 at 141.325 kb on + strand, within Atu3133 at 141.359 kb on + strand, within Atu3133 at 141.366 kb on - strand, within Atu3133 at 141.366 kb on - strand, within Atu3133 at 141.367 kb on - strand, within Atu3133 at 141.386 kb on - strand, within Atu3133 at 141.473 kb on + strand, within Atu3133 at 141.727 kb on + strand, within Atu3133 at 141.727 kb on + strand, within Atu3133 at 141.735 kb on - strand, within Atu3133 at 141.827 kb on + strand, within Atu3133 at 141.835 kb on - strand, within Atu3133 at 141.848 kb on + strand, within Atu3133 at 142.209 kb on + strand at 142.217 kb on - strand at 142.289 kb on + strand, within Atu3134 at 142.296 kb on - strand, within Atu3134 at 142.297 kb on - strand, within Atu3134 at 142.299 kb on + strand, within Atu3134 at 142.307 kb on - strand, within Atu3134 at 142.352 kb on - strand, within Atu3134 at 142.379 kb on + strand, within Atu3134 at 142.548 kb on - strand, within Atu3134 at 142.564 kb on - strand, within Atu3134 at 142.609 kb on - strand, within Atu3134 at 142.614 kb on + strand, within Atu3134 at 142.696 kb on + strand, within Atu3134 at 142.704 kb on - strand, within Atu3134 at 142.742 kb on - strand, within Atu3134
Per-strain Table
Position Strand Gene LocusTag Fraction R2A pH 5.5 remove 140,067 - +0.3 140,116 + -0.8 140,116 + -0.4 140,116 + -0.3 140,131 + -0.1 140,237 + -0.2 140,302 - Atu3132 0.14 -0.1 140,357 - Atu3132 0.21 +0.4 140,423 - Atu3132 0.28 -0.9 140,451 + Atu3132 0.31 -0.0 140,482 - Atu3132 0.35 -0.9 140,580 + Atu3132 0.46 +0.1 140,616 - Atu3132 0.50 +1.2 140,638 - Atu3132 0.52 -0.4 140,680 - Atu3132 0.57 +0.8 140,734 - Atu3132 0.63 +0.1 140,734 - Atu3132 0.63 +0.2 140,747 + Atu3132 0.65 +0.0 140,850 - Atu3132 0.76 -0.7 140,928 + Atu3132 0.85 +0.7 140,950 + Atu3132 0.88 +0.0 140,986 - +0.6 140,988 + +1.1 141,001 + +0.4 141,035 + -0.1 141,069 - -0.9 141,207 + Atu3133 0.16 -0.2 141,210 - Atu3133 0.17 -0.6 141,325 + Atu3133 0.30 -2.4 141,359 + Atu3133 0.34 +0.0 141,366 - Atu3133 0.34 -0.7 141,366 - Atu3133 0.34 -0.1 141,367 - Atu3133 0.34 -0.4 141,386 - Atu3133 0.37 +0.4 141,473 + Atu3133 0.46 -0.4 141,727 + Atu3133 0.75 -0.5 141,727 + Atu3133 0.75 -0.6 141,735 - Atu3133 0.76 -0.7 141,827 + Atu3133 0.87 +0.2 141,835 - Atu3133 0.88 -0.4 141,848 + Atu3133 0.89 -0.8 142,209 + +0.3 142,217 - -0.4 142,289 + Atu3134 0.14 +0.5 142,296 - Atu3134 0.15 +0.1 142,297 - Atu3134 0.15 +0.4 142,299 + Atu3134 0.15 +0.8 142,307 - Atu3134 0.16 -0.9 142,352 - Atu3134 0.21 -0.8 142,379 + Atu3134 0.24 +0.1 142,548 - Atu3134 0.42 +0.2 142,564 - Atu3134 0.44 -0.3 142,609 - Atu3134 0.49 -0.3 142,614 + Atu3134 0.49 +0.2 142,696 + Atu3134 0.58 +0.1 142,704 - Atu3134 0.59 -0.9 142,742 - Atu3134 0.63 -0.9
Or see this region's nucleotide sequence