Strain Fitness in Pseudomonas putida KT2440 around PP_0220

Experiment: D-Glucose (C) with 20AA_mix_minus_Asp

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPP_0218 and PP_0219 are separated by 28 nucleotidesPP_0219 and PP_0220 overlap by 11 nucleotidesPP_0220 and PP_0221 are separated by 1 nucleotidesPP_0221 and PP_0222 overlap by 8 nucleotides PP_0218: PP_0218 - Sensory box protein, at 270,100 to 271,995 _0218 PP_0219: PP_0219 - L,D-methionine D-methionine ABC transporter - permease subunit, at 272,024 to 272,668 _0219 PP_0220: PP_0220 - methionine import ATP-binding protein metN2, at 272,658 to 273,767 _0220 PP_0221: PP_0221 - methionine ABC transporter periplasmic-binding lipoprotein (metQ-like protein), at 273,769 to 274,569 _0221 PP_0222: PP_0222 - Monooxygenase, DszA family, at 274,562 to 275,947 _0222 Position (kb) 272 273 274Strain fitness (log2 ratio) -3 -2 -1 0 1at 271.857 kb on + strandat 271.948 kb on + strandat 272.082 kb on - strandat 272.136 kb on + strand, within PP_0219at 272.221 kb on + strand, within PP_0219at 272.221 kb on + strand, within PP_0219at 272.221 kb on + strand, within PP_0219at 272.267 kb on + strand, within PP_0219at 272.267 kb on + strand, within PP_0219at 272.267 kb on + strand, within PP_0219at 272.267 kb on + strand, within PP_0219at 272.267 kb on + strand, within PP_0219at 272.267 kb on + strand, within PP_0219at 272.267 kb on + strand, within PP_0219at 272.267 kb on + strand, within PP_0219at 272.268 kb on - strand, within PP_0219at 272.268 kb on - strand, within PP_0219at 272.268 kb on - strand, within PP_0219at 272.418 kb on + strand, within PP_0219at 272.418 kb on + strand, within PP_0219at 272.418 kb on + strand, within PP_0219at 272.418 kb on + strand, within PP_0219at 272.418 kb on + strand, within PP_0219at 272.418 kb on + strand, within PP_0219at 272.419 kb on - strand, within PP_0219at 272.419 kb on - strand, within PP_0219at 272.419 kb on - strand, within PP_0219at 272.419 kb on - strand, within PP_0219at 272.582 kb on + strand, within PP_0219at 272.582 kb on + strand, within PP_0219at 272.583 kb on - strand, within PP_0219at 272.632 kb on + strandat 272.633 kb on - strandat 272.633 kb on - strandat 272.676 kb on + strandat 272.677 kb on - strandat 273.271 kb on + strand, within PP_0220at 273.495 kb on + strand, within PP_0220at 273.551 kb on + strand, within PP_0220at 273.552 kb on - strandat 273.552 kb on - strand, within PP_0220at 273.644 kb on - strand, within PP_0220at 273.791 kb on + strandat 273.792 kb on - strandat 273.792 kb on - strandat 273.792 kb on - strandat 273.792 kb on - strandat 273.845 kb on + strandat 273.845 kb on + strandat 273.845 kb on + strandat 273.845 kb on + strandat 273.845 kb on + strandat 273.846 kb on - strandat 273.846 kb on - strandat 273.846 kb on - strandat 273.846 kb on - strandat 273.846 kb on - strandat 273.846 kb on - strandat 273.914 kb on + strand, within PP_0221at 273.914 kb on + strand, within PP_0221at 273.914 kb on + strand, within PP_0221at 273.914 kb on + strand, within PP_0221at 273.914 kb on + strand, within PP_0221at 273.915 kb on - strand, within PP_0221at 273.915 kb on - strand, within PP_0221at 273.954 kb on + strand, within PP_0221at 273.983 kb on + strand, within PP_0221at 273.983 kb on + strand, within PP_0221at 273.983 kb on + strand, within PP_0221at 273.984 kb on - strand, within PP_0221at 274.103 kb on + strand, within PP_0221at 274.104 kb on - strand, within PP_0221at 274.337 kb on + strand, within PP_0221at 274.337 kb on + strand, within PP_0221at 274.476 kb on + strand, within PP_0221at 274.597 kb on + strandat 274.684 kb on - strandat 274.696 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C) with 20AA_mix_minus_Asp
remove
271,857 + -1.6
271,948 + -0.6
272,082 - +0.2
272,136 + PP_0219 0.17 +0.6
272,221 + PP_0219 0.31 +1.5
272,221 + PP_0219 0.31 -0.0
272,221 + PP_0219 0.31 -1.0
272,267 + PP_0219 0.38 -0.4
272,267 + PP_0219 0.38 +0.5
272,267 + PP_0219 0.38 -0.7
272,267 + PP_0219 0.38 +0.2
272,267 + PP_0219 0.38 +0.5
272,267 + PP_0219 0.38 +0.0
272,267 + PP_0219 0.38 +0.3
272,267 + PP_0219 0.38 -0.8
272,268 - PP_0219 0.38 -0.4
272,268 - PP_0219 0.38 -0.4
272,268 - PP_0219 0.38 +0.8
272,418 + PP_0219 0.61 -0.1
272,418 + PP_0219 0.61 +0.2
272,418 + PP_0219 0.61 -0.7
272,418 + PP_0219 0.61 +0.1
272,418 + PP_0219 0.61 -0.7
272,418 + PP_0219 0.61 -3.2
272,419 - PP_0219 0.61 -0.5
272,419 - PP_0219 0.61 +0.2
272,419 - PP_0219 0.61 -1.1
272,419 - PP_0219 0.61 -0.8
272,582 + PP_0219 0.87 +0.2
272,582 + PP_0219 0.87 +0.2
272,583 - PP_0219 0.87 -0.3
272,632 + +0.9
272,633 - -0.9
272,633 - -0.9
272,676 + +0.1
272,677 - -1.0
273,271 + PP_0220 0.55 +0.9
273,495 + PP_0220 0.75 +0.4
273,551 + PP_0220 0.80 +0.5
273,552 - -1.1
273,552 - PP_0220 0.81 -0.1
273,644 - PP_0220 0.89 +0.5
273,791 + -1.8
273,792 - +0.6
273,792 - -0.5
273,792 - -0.3
273,792 - +0.2
273,845 + -0.7
273,845 + +0.3
273,845 + -0.6
273,845 + -0.1
273,845 + +0.7
273,846 - +0.1
273,846 - -1.6
273,846 - -0.5
273,846 - -0.0
273,846 - +0.1
273,846 - +0.4
273,914 + PP_0221 0.18 -0.3
273,914 + PP_0221 0.18 +0.2
273,914 + PP_0221 0.18 -0.0
273,914 + PP_0221 0.18 +0.3
273,914 + PP_0221 0.18 -0.7
273,915 - PP_0221 0.18 +0.3
273,915 - PP_0221 0.18 -0.6
273,954 + PP_0221 0.23 -0.3
273,983 + PP_0221 0.27 +0.2
273,983 + PP_0221 0.27 -0.9
273,983 + PP_0221 0.27 +0.3
273,984 - PP_0221 0.27 +0.9
274,103 + PP_0221 0.42 +0.7
274,104 - PP_0221 0.42 -0.3
274,337 + PP_0221 0.71 +0.1
274,337 + PP_0221 0.71 -0.2
274,476 + PP_0221 0.88 +0.0
274,597 + +0.2
274,684 - +0.2
274,696 - -0.1

Or see this region's nucleotide sequence