Experiment: R2A pH 5.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu6008 and Atu6009 are separated by 613 nucleotides Atu6009 and Atu6010 are separated by 504 nucleotides
Atu6008: Atu6008 - agrocinopine synthase, at 11,591 to 12,847
Atu6008
Atu6009: Atu6009 - indole-3-lactate synthase, at 13,461 to 14,126
Atu6009
Atu6010: Atu6010 - indole acetamide hydrolase, at 14,631 to 16,034
Atu6010
Position (kb) 13
14
15 Strain fitness (log2 ratio) -1
0
1
2 at 12.604 kb on + strand, within Atu6008 at 12.604 kb on + strand, within Atu6008 at 12.628 kb on + strand, within Atu6008 at 12.636 kb on - strand, within Atu6008 at 12.647 kb on - strand, within Atu6008 at 12.649 kb on + strand, within Atu6008 at 12.699 kb on + strand, within Atu6008 at 12.704 kb on + strand, within Atu6008 at 12.704 kb on + strand, within Atu6008 at 12.714 kb on - strand, within Atu6008 at 12.727 kb on + strand at 12.730 kb on - strand at 12.740 kb on - strand at 12.752 kb on + strand at 12.752 kb on + strand at 12.752 kb on + strand at 12.757 kb on + strand at 12.778 kb on + strand at 12.778 kb on + strand at 12.786 kb on - strand at 12.807 kb on + strand at 12.813 kb on - strand at 12.817 kb on - strand at 12.837 kb on + strand at 12.846 kb on + strand at 12.855 kb on + strand at 12.863 kb on - strand at 13.157 kb on - strand at 13.361 kb on + strand at 13.554 kb on + strand, within Atu6009 at 13.598 kb on - strand, within Atu6009 at 13.666 kb on - strand, within Atu6009 at 13.818 kb on + strand, within Atu6009 at 13.838 kb on - strand, within Atu6009 at 13.838 kb on - strand, within Atu6009 at 13.838 kb on - strand, within Atu6009 at 14.055 kb on + strand, within Atu6009 at 14.055 kb on + strand, within Atu6009 at 14.093 kb on - strand at 14.101 kb on - strand at 14.108 kb on + strand at 14.142 kb on + strand at 14.142 kb on + strand at 14.150 kb on - strand at 14.155 kb on - strand at 14.360 kb on + strand at 14.360 kb on - strand at 14.366 kb on + strand at 14.368 kb on - strand at 14.368 kb on - strand at 14.368 kb on - strand at 14.541 kb on + strand at 14.623 kb on + strand at 14.632 kb on - strand at 14.674 kb on + strand at 14.705 kb on + strand at 14.713 kb on - strand at 14.714 kb on + strand at 14.714 kb on - strand at 14.722 kb on - strand at 14.755 kb on + strand at 14.755 kb on + strand at 14.755 kb on + strand at 14.755 kb on + strand at 14.755 kb on + strand at 14.756 kb on + strand at 14.756 kb on + strand at 14.763 kb on - strand at 14.763 kb on - strand at 14.763 kb on - strand at 14.763 kb on - strand at 14.763 kb on - strand at 14.763 kb on - strand at 14.763 kb on - strand at 14.764 kb on - strand at 14.775 kb on + strand, within Atu6010 at 14.775 kb on + strand, within Atu6010 at 14.783 kb on - strand, within Atu6010 at 14.783 kb on - strand, within Atu6010 at 14.787 kb on - strand, within Atu6010 at 14.789 kb on + strand, within Atu6010 at 14.789 kb on + strand, within Atu6010 at 14.810 kb on - strand, within Atu6010 at 14.826 kb on + strand, within Atu6010 at 14.834 kb on - strand, within Atu6010 at 14.843 kb on + strand, within Atu6010 at 14.856 kb on + strand, within Atu6010 at 14.871 kb on + strand, within Atu6010 at 14.871 kb on + strand, within Atu6010 at 14.871 kb on + strand, within Atu6010 at 14.871 kb on + strand, within Atu6010 at 14.871 kb on + strand, within Atu6010 at 14.879 kb on - strand, within Atu6010 at 14.879 kb on - strand, within Atu6010 at 14.879 kb on - strand, within Atu6010 at 14.879 kb on - strand, within Atu6010 at 14.879 kb on - strand, within Atu6010 at 14.886 kb on - strand, within Atu6010 at 14.886 kb on - strand, within Atu6010 at 14.898 kb on + strand, within Atu6010 at 14.906 kb on - strand, within Atu6010 at 14.915 kb on + strand, within Atu6010 at 14.943 kb on - strand, within Atu6010 at 14.944 kb on - strand, within Atu6010 at 14.959 kb on + strand, within Atu6010 at 14.966 kb on + strand, within Atu6010 at 14.966 kb on + strand, within Atu6010 at 14.966 kb on - strand, within Atu6010 at 14.974 kb on - strand, within Atu6010 at 14.979 kb on + strand, within Atu6010 at 15.045 kb on - strand, within Atu6010
Per-strain Table
Position Strand Gene LocusTag Fraction R2A pH 5.5 remove 12,604 + Atu6008 0.81 -0.5 12,604 + Atu6008 0.81 -0.7 12,628 + Atu6008 0.82 -0.4 12,636 - Atu6008 0.83 +0.9 12,647 - Atu6008 0.84 -0.1 12,649 + Atu6008 0.84 +0.8 12,699 + Atu6008 0.88 +0.3 12,704 + Atu6008 0.89 -0.1 12,704 + Atu6008 0.89 +0.2 12,714 - Atu6008 0.89 -1.4 12,727 + -0.4 12,730 - +1.4 12,740 - -0.2 12,752 + +0.2 12,752 + -0.5 12,752 + -0.6 12,757 + -0.5 12,778 + -1.3 12,778 + +0.3 12,786 - -0.6 12,807 + +0.3 12,813 - -0.1 12,817 - -0.2 12,837 + -0.4 12,846 + -0.4 12,855 + -0.5 12,863 - +0.0 13,157 - -1.5 13,361 + -0.3 13,554 + Atu6009 0.14 +0.2 13,598 - Atu6009 0.21 -1.0 13,666 - Atu6009 0.31 -1.0 13,818 + Atu6009 0.54 +0.4 13,838 - Atu6009 0.57 -0.6 13,838 - Atu6009 0.57 -0.7 13,838 - Atu6009 0.57 +1.8 14,055 + Atu6009 0.89 -0.3 14,055 + Atu6009 0.89 -0.7 14,093 - +0.0 14,101 - -1.5 14,108 + -0.1 14,142 + -0.6 14,142 + -1.0 14,150 - +0.0 14,155 - -0.0 14,360 + +0.2 14,360 - -0.6 14,366 + -1.1 14,368 - -1.2 14,368 - -1.2 14,368 - -0.5 14,541 + -0.8 14,623 + -0.9 14,632 - +1.3 14,674 + -1.7 14,705 + -1.1 14,713 - -0.2 14,714 + +1.2 14,714 - -0.9 14,722 - -1.3 14,755 + +0.5 14,755 + +0.3 14,755 + -0.8 14,755 + -1.3 14,755 + -1.2 14,756 + +0.5 14,756 + +0.1 14,763 - -1.3 14,763 - -0.6 14,763 - -0.3 14,763 - -0.6 14,763 - -0.0 14,763 - -1.0 14,763 - +0.3 14,764 - +0.1 14,775 + Atu6010 0.10 +0.1 14,775 + Atu6010 0.10 -0.0 14,783 - Atu6010 0.11 -0.7 14,783 - Atu6010 0.11 -0.2 14,787 - Atu6010 0.11 -0.2 14,789 + Atu6010 0.11 -0.5 14,789 + Atu6010 0.11 -0.0 14,810 - Atu6010 0.13 -0.9 14,826 + Atu6010 0.14 -0.2 14,834 - Atu6010 0.14 -0.2 14,843 + Atu6010 0.15 +0.2 14,856 + Atu6010 0.16 -0.6 14,871 + Atu6010 0.17 -0.1 14,871 + Atu6010 0.17 -0.2 14,871 + Atu6010 0.17 -0.1 14,871 + Atu6010 0.17 -0.6 14,871 + Atu6010 0.17 +0.3 14,879 - Atu6010 0.18 -0.1 14,879 - Atu6010 0.18 -0.9 14,879 - Atu6010 0.18 -0.7 14,879 - Atu6010 0.18 +0.8 14,879 - Atu6010 0.18 +0.2 14,886 - Atu6010 0.18 +0.3 14,886 - Atu6010 0.18 +0.2 14,898 + Atu6010 0.19 -0.7 14,906 - Atu6010 0.20 -0.0 14,915 + Atu6010 0.20 +0.2 14,943 - Atu6010 0.22 -0.5 14,944 - Atu6010 0.22 +0.8 14,959 + Atu6010 0.23 -0.5 14,966 + Atu6010 0.24 -0.6 14,966 + Atu6010 0.24 -0.5 14,966 - Atu6010 0.24 -0.0 14,974 - Atu6010 0.24 -0.4 14,979 + Atu6010 0.25 -0.3 15,045 - Atu6010 0.29 -0.8
Or see this region's nucleotide sequence