Strain Fitness in Agrobacterium fabrum C58 around Atu5032

Experiment: R2A pH 5.5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu5031 and Atu5032 are separated by 195 nucleotidesAtu5032 and Atu5033 are separated by 31 nucleotides Atu5031: Atu5031 - hypothetical protein, at 31,458 to 32,576 Atu5031 Atu5032: Atu5032 - hypothetical protein, at 32,772 to 33,533 Atu5032 Atu5033: Atu5033 - hypothetical protein, at 33,565 to 34,635 Atu5033 Position (kb) 32 33 34Strain fitness (log2 ratio) -2 -1 0 1at 31.919 kb on - strand, within Atu5031at 31.928 kb on - strand, within Atu5031at 31.930 kb on - strand, within Atu5031at 31.938 kb on + strand, within Atu5031at 32.056 kb on - strand, within Atu5031at 32.128 kb on + strand, within Atu5031at 32.128 kb on + strand, within Atu5031at 32.128 kb on + strand, within Atu5031at 32.252 kb on + strand, within Atu5031at 32.269 kb on + strand, within Atu5031at 32.274 kb on + strand, within Atu5031at 32.274 kb on + strand, within Atu5031at 32.275 kb on + strand, within Atu5031at 32.275 kb on + strand, within Atu5031at 32.282 kb on - strand, within Atu5031at 32.283 kb on - strand, within Atu5031at 32.322 kb on + strand, within Atu5031at 32.362 kb on + strand, within Atu5031at 32.370 kb on - strand, within Atu5031at 32.391 kb on - strand, within Atu5031at 32.487 kb on - strandat 32.493 kb on + strandat 32.498 kb on + strandat 32.530 kb on - strandat 32.588 kb on + strandat 32.588 kb on + strandat 32.596 kb on - strandat 32.630 kb on + strandat 32.657 kb on + strandat 32.768 kb on + strandat 32.778 kb on - strandat 32.783 kb on + strandat 32.783 kb on + strandat 32.783 kb on + strandat 32.783 kb on + strandat 32.791 kb on - strandat 32.791 kb on - strandat 32.791 kb on - strandat 32.791 kb on - strandat 32.836 kb on + strandat 32.858 kb on + strand, within Atu5032at 32.858 kb on + strand, within Atu5032at 32.866 kb on - strand, within Atu5032at 32.866 kb on - strand, within Atu5032at 32.928 kb on - strand, within Atu5032at 32.928 kb on - strand, within Atu5032at 32.957 kb on - strand, within Atu5032at 32.957 kb on - strand, within Atu5032at 33.015 kb on + strand, within Atu5032at 33.023 kb on - strand, within Atu5032at 33.023 kb on - strand, within Atu5032at 33.192 kb on + strand, within Atu5032at 33.192 kb on + strand, within Atu5032at 33.192 kb on + strand, within Atu5032at 33.200 kb on - strand, within Atu5032at 33.200 kb on - strand, within Atu5032at 33.200 kb on - strand, within Atu5032at 33.219 kb on - strand, within Atu5032at 33.224 kb on - strand, within Atu5032at 33.269 kb on + strand, within Atu5032at 33.303 kb on - strand, within Atu5032at 33.337 kb on + strand, within Atu5032at 33.340 kb on + strand, within Atu5032at 33.340 kb on - strand, within Atu5032at 33.342 kb on + strand, within Atu5032at 33.342 kb on + strand, within Atu5032at 33.342 kb on + strand, within Atu5032at 33.347 kb on + strand, within Atu5032at 33.347 kb on + strand, within Atu5032at 33.347 kb on + strand, within Atu5032at 33.347 kb on + strand, within Atu5032at 33.348 kb on - strand, within Atu5032at 33.350 kb on - strand, within Atu5032at 33.350 kb on - strand, within Atu5032at 33.350 kb on - strand, within Atu5032at 33.350 kb on - strand, within Atu5032at 33.350 kb on - strand, within Atu5032at 33.355 kb on - strand, within Atu5032at 33.395 kb on + strand, within Atu5032at 33.433 kb on + strand, within Atu5032at 33.453 kb on - strand, within Atu5032at 33.462 kb on + strandat 33.500 kb on + strandat 33.529 kb on + strandat 33.534 kb on + strandat 33.537 kb on - strandat 33.542 kb on - strandat 33.629 kb on + strandat 33.637 kb on - strandat 33.684 kb on - strand, within Atu5033at 33.727 kb on + strand, within Atu5033at 33.809 kb on - strand, within Atu5033at 33.924 kb on + strand, within Atu5033at 33.924 kb on + strand, within Atu5033at 33.944 kb on + strand, within Atu5033at 33.977 kb on + strand, within Atu5033at 34.024 kb on + strand, within Atu5033at 34.024 kb on + strand, within Atu5033at 34.024 kb on + strand, within Atu5033at 34.024 kb on + strand, within Atu5033at 34.024 kb on + strand, within Atu5033at 34.024 kb on + strand, within Atu5033at 34.024 kb on + strand, within Atu5033at 34.024 kb on + strand, within Atu5033at 34.024 kb on + strand, within Atu5033at 34.024 kb on + strand, within Atu5033at 34.024 kb on + strand, within Atu5033at 34.024 kb on + strand, within Atu5033at 34.024 kb on + strand, within Atu5033at 34.024 kb on + strand, within Atu5033at 34.024 kb on + strand, within Atu5033at 34.024 kb on + strand, within Atu5033at 34.024 kb on + strand, within Atu5033at 34.024 kb on + strand, within Atu5033at 34.024 kb on + strand, within Atu5033at 34.032 kb on - strand, within Atu5033at 34.032 kb on - strand, within Atu5033at 34.032 kb on - strand, within Atu5033at 34.032 kb on - strand, within Atu5033at 34.032 kb on - strand, within Atu5033at 34.032 kb on - strand, within Atu5033at 34.032 kb on - strand, within Atu5033at 34.032 kb on - strand, within Atu5033at 34.032 kb on - strand, within Atu5033at 34.032 kb on - strand, within Atu5033at 34.032 kb on - strand, within Atu5033at 34.032 kb on - strand, within Atu5033at 34.032 kb on - strand, within Atu5033at 34.032 kb on - strand, within Atu5033at 34.032 kb on - strand, within Atu5033at 34.032 kb on - strand, within Atu5033at 34.032 kb on - strand, within Atu5033at 34.050 kb on - strand, within Atu5033at 34.073 kb on - strand, within Atu5033at 34.097 kb on + strand, within Atu5033at 34.097 kb on + strand, within Atu5033at 34.097 kb on + strand, within Atu5033at 34.105 kb on - strand, within Atu5033at 34.111 kb on - strand, within Atu5033at 34.194 kb on + strand, within Atu5033at 34.313 kb on - strand, within Atu5033at 34.342 kb on - strand, within Atu5033at 34.366 kb on - strand, within Atu5033at 34.370 kb on + strand, within Atu5033at 34.375 kb on + strand, within Atu5033at 34.378 kb on - strand, within Atu5033at 34.414 kb on - strand, within Atu5033at 34.425 kb on - strand, within Atu5033at 34.466 kb on - strand, within Atu5033at 34.471 kb on - strand, within Atu5033at 34.512 kb on - strand, within Atu5033at 34.519 kb on - strand, within Atu5033

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A pH 5.5
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31,919 - Atu5031 0.41 +0.3
31,928 - Atu5031 0.42 -1.0
31,930 - Atu5031 0.42 +0.1
31,938 + Atu5031 0.43 -0.5
32,056 - Atu5031 0.53 +0.7
32,128 + Atu5031 0.60 -0.1
32,128 + Atu5031 0.60 -0.3
32,128 + Atu5031 0.60 +0.8
32,252 + Atu5031 0.71 -1.4
32,269 + Atu5031 0.72 -0.5
32,274 + Atu5031 0.73 -0.6
32,274 + Atu5031 0.73 -1.3
32,275 + Atu5031 0.73 -0.4
32,275 + Atu5031 0.73 -1.4
32,282 - Atu5031 0.74 -0.5
32,283 - Atu5031 0.74 -0.3
32,322 + Atu5031 0.77 -1.9
32,362 + Atu5031 0.81 -0.8
32,370 - Atu5031 0.82 -0.6
32,391 - Atu5031 0.83 -0.3
32,487 - -0.4
32,493 + -1.4
32,498 + -0.6
32,530 - +0.4
32,588 + +0.1
32,588 + +0.8
32,596 - -0.3
32,630 + -0.8
32,657 + -0.1
32,768 + -1.3
32,778 - +0.8
32,783 + -0.3
32,783 + -0.6
32,783 + +0.4
32,783 + +0.0
32,791 - +0.0
32,791 - -0.2
32,791 - -0.6
32,791 - -1.0
32,836 + -0.8
32,858 + Atu5032 0.11 -0.7
32,858 + Atu5032 0.11 -1.7
32,866 - Atu5032 0.12 -0.2
32,866 - Atu5032 0.12 -0.0
32,928 - Atu5032 0.20 -0.4
32,928 - Atu5032 0.20 -0.6
32,957 - Atu5032 0.24 -0.6
32,957 - Atu5032 0.24 -0.3
33,015 + Atu5032 0.32 -0.6
33,023 - Atu5032 0.33 -0.1
33,023 - Atu5032 0.33 -0.1
33,192 + Atu5032 0.55 -1.5
33,192 + Atu5032 0.55 -1.5
33,192 + Atu5032 0.55 +0.1
33,200 - Atu5032 0.56 -0.8
33,200 - Atu5032 0.56 -0.2
33,200 - Atu5032 0.56 -0.8
33,219 - Atu5032 0.59 -0.0
33,224 - Atu5032 0.59 +0.1
33,269 + Atu5032 0.65 -1.1
33,303 - Atu5032 0.70 -0.5
33,337 + Atu5032 0.74 -0.3
33,340 + Atu5032 0.75 -1.3
33,340 - Atu5032 0.75 +1.1
33,342 + Atu5032 0.75 -0.2
33,342 + Atu5032 0.75 -0.2
33,342 + Atu5032 0.75 -1.3
33,347 + Atu5032 0.75 -0.2
33,347 + Atu5032 0.75 -0.2
33,347 + Atu5032 0.75 -0.9
33,347 + Atu5032 0.75 -0.7
33,348 - Atu5032 0.76 +0.4
33,350 - Atu5032 0.76 -1.1
33,350 - Atu5032 0.76 -0.8
33,350 - Atu5032 0.76 -0.7
33,350 - Atu5032 0.76 -2.3
33,350 - Atu5032 0.76 -1.3
33,355 - Atu5032 0.77 +1.6
33,395 + Atu5032 0.82 +1.0
33,433 + Atu5032 0.87 -0.7
33,453 - Atu5032 0.89 +0.5
33,462 + -0.9
33,500 + -0.3
33,529 + -0.4
33,534 + +0.0
33,537 - -0.4
33,542 - +0.5
33,629 + -0.2
33,637 - -0.5
33,684 - Atu5033 0.11 -0.5
33,727 + Atu5033 0.15 -1.2
33,809 - Atu5033 0.23 +0.1
33,924 + Atu5033 0.34 -0.6
33,924 + Atu5033 0.34 -0.8
33,944 + Atu5033 0.35 -0.8
33,977 + Atu5033 0.38 -0.1
34,024 + Atu5033 0.43 -0.1
34,024 + Atu5033 0.43 +0.8
34,024 + Atu5033 0.43 -1.2
34,024 + Atu5033 0.43 -0.3
34,024 + Atu5033 0.43 -2.1
34,024 + Atu5033 0.43 +0.0
34,024 + Atu5033 0.43 -2.3
34,024 + Atu5033 0.43 -0.5
34,024 + Atu5033 0.43 -0.5
34,024 + Atu5033 0.43 -1.0
34,024 + Atu5033 0.43 -0.7
34,024 + Atu5033 0.43 -0.8
34,024 + Atu5033 0.43 -1.2
34,024 + Atu5033 0.43 -1.2
34,024 + Atu5033 0.43 -0.7
34,024 + Atu5033 0.43 -0.1
34,024 + Atu5033 0.43 -0.8
34,024 + Atu5033 0.43 -0.9
34,024 + Atu5033 0.43 +0.3
34,032 - Atu5033 0.44 +0.8
34,032 - Atu5033 0.44 -0.7
34,032 - Atu5033 0.44 -0.6
34,032 - Atu5033 0.44 -0.5
34,032 - Atu5033 0.44 +0.2
34,032 - Atu5033 0.44 -0.4
34,032 - Atu5033 0.44 -1.2
34,032 - Atu5033 0.44 -1.2
34,032 - Atu5033 0.44 +0.0
34,032 - Atu5033 0.44 +0.1
34,032 - Atu5033 0.44 -0.8
34,032 - Atu5033 0.44 +0.8
34,032 - Atu5033 0.44 -0.2
34,032 - Atu5033 0.44 -0.4
34,032 - Atu5033 0.44 -1.0
34,032 - Atu5033 0.44 +0.1
34,032 - Atu5033 0.44 +0.1
34,050 - Atu5033 0.45 -0.1
34,073 - Atu5033 0.47 -1.7
34,097 + Atu5033 0.50 -0.6
34,097 + Atu5033 0.50 -0.4
34,097 + Atu5033 0.50 -0.2
34,105 - Atu5033 0.50 -0.5
34,111 - Atu5033 0.51 +0.1
34,194 + Atu5033 0.59 -0.1
34,313 - Atu5033 0.70 +0.1
34,342 - Atu5033 0.73 +0.2
34,366 - Atu5033 0.75 +0.4
34,370 + Atu5033 0.75 +0.7
34,375 + Atu5033 0.76 -0.5
34,378 - Atu5033 0.76 -0.4
34,414 - Atu5033 0.79 +0.4
34,425 - Atu5033 0.80 -0.9
34,466 - Atu5033 0.84 -0.1
34,471 - Atu5033 0.85 -0.5
34,512 - Atu5033 0.88 -0.4
34,519 - Atu5033 0.89 +0.8

Or see this region's nucleotide sequence