Experiment: Lactulose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu1809 and Atu1810 are separated by 269 nucleotides Atu1810 and Atu1811 are separated by 42 nucleotides Atu1811 and Atu1812 are separated by 181 nucleotides Atu1812 and Atu1813 are separated by 10 nucleotides Atu1813 and Atu1814 are separated by 90 nucleotides
Atu1809: Atu1809 - tRNA-Pro, at 1,791,716 to 1,791,792
Atu1809
Atu1810: Atu1810 - hypothetical protein, at 1,792,062 to 1,792,367
Atu1810
Atu1811: Atu1811 - tRNA-Arg, at 1,792,410 to 1,792,486
Atu1811
Atu1812: Atu1812 - hypothetical protein, at 1,792,668 to 1,792,880
Atu1812
Atu1813: Atu1813 - hypothetical protein, at 1,792,891 to 1,793,313
Atu1813
Atu1814: Atu1814 - epoxide hydrolase, at 1,793,404 to 1,794,459
Atu1814
Position (kb)
1792
1793 Strain fitness (log2 ratio)
-2
-1
0
1 at 1791.855 kb on + strand at 1791.868 kb on - strand at 1791.930 kb on - strand at 1792.249 kb on + strand, within Atu1810 at 1792.259 kb on + strand, within Atu1810 at 1792.352 kb on + strand at 1792.352 kb on + strand at 1792.352 kb on + strand at 1792.531 kb on - strand at 1792.666 kb on - strand at 1792.721 kb on - strand, within Atu1812 at 1792.771 kb on + strand, within Atu1812 at 1792.771 kb on + strand, within Atu1812 at 1792.791 kb on + strand, within Atu1812 at 1792.799 kb on + strand, within Atu1812 at 1792.931 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Lactulose (C) remove 1,791,855 + -0.5 1,791,868 - -0.4 1,791,930 - -1.2 1,792,249 + Atu1810 0.61 +1.5 1,792,259 + Atu1810 0.64 -2.3 1,792,352 + +0.2 1,792,352 + -0.2 1,792,352 + -0.2 1,792,531 - -1.6 1,792,666 - +0.1 1,792,721 - Atu1812 0.25 +0.1 1,792,771 + Atu1812 0.48 +0.8 1,792,771 + Atu1812 0.48 +0.0 1,792,791 + Atu1812 0.58 +1.3 1,792,799 + Atu1812 0.62 +0.1 1,792,931 - -0.1
Or see this region's nucleotide sequence