Experiment: Lactulose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0316 and Atu0317 overlap by 4 nucleotides Atu0317 and Atu0318 are separated by 7 nucleotides
Atu0316: Atu0316 - DNA/pantothenate metabolism flavoprotein, at 309,110 to 310,315
Atu0316
Atu0317: Atu0317 - hypothetical protein, at 310,312 to 310,686
Atu0317
Atu0318: Atu0318 - hypothetical protein, at 310,694 to 311,608
Atu0318
Position (kb) 310
311 Strain fitness (log2 ratio) -1
0
1
2 at 310.397 kb on + strand, within Atu0317 at 310.456 kb on + strand, within Atu0317 at 310.579 kb on + strand, within Atu0317 at 310.601 kb on + strand, within Atu0317 at 310.604 kb on + strand, within Atu0317 at 310.604 kb on + strand, within Atu0317 at 310.612 kb on - strand, within Atu0317 at 310.670 kb on - strand at 310.748 kb on + strand at 310.772 kb on + strand at 310.810 kb on + strand, within Atu0318 at 311.017 kb on + strand, within Atu0318 at 311.056 kb on - strand, within Atu0318 at 311.061 kb on + strand, within Atu0318 at 311.121 kb on + strand, within Atu0318 at 311.149 kb on + strand, within Atu0318 at 311.149 kb on + strand, within Atu0318 at 311.196 kb on + strand, within Atu0318 at 311.196 kb on + strand, within Atu0318 at 311.199 kb on + strand, within Atu0318 at 311.204 kb on - strand, within Atu0318 at 311.228 kb on - strand, within Atu0318 at 311.325 kb on - strand, within Atu0318 at 311.398 kb on - strand, within Atu0318 at 311.417 kb on - strand, within Atu0318 at 311.459 kb on + strand, within Atu0318 at 311.459 kb on + strand, within Atu0318 at 311.474 kb on + strand, within Atu0318 at 311.658 kb on - strand at 311.671 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Lactulose (C) remove 310,397 + Atu0317 0.23 +0.5 310,456 + Atu0317 0.38 -1.0 310,579 + Atu0317 0.71 +0.6 310,601 + Atu0317 0.77 +0.0 310,604 + Atu0317 0.78 +0.4 310,604 + Atu0317 0.78 +0.2 310,612 - Atu0317 0.80 +0.2 310,670 - -0.0 310,748 + -0.4 310,772 + +0.4 310,810 + Atu0318 0.13 +0.3 311,017 + Atu0318 0.35 +0.2 311,056 - Atu0318 0.40 +0.2 311,061 + Atu0318 0.40 -0.0 311,121 + Atu0318 0.47 -0.5 311,149 + Atu0318 0.50 -0.0 311,149 + Atu0318 0.50 -0.5 311,196 + Atu0318 0.55 -0.1 311,196 + Atu0318 0.55 +0.8 311,199 + Atu0318 0.55 -0.2 311,204 - Atu0318 0.56 +0.4 311,228 - Atu0318 0.58 -0.6 311,325 - Atu0318 0.69 +0.4 311,398 - Atu0318 0.77 -0.5 311,417 - Atu0318 0.79 +0.2 311,459 + Atu0318 0.84 +2.0 311,459 + Atu0318 0.84 +0.3 311,474 + Atu0318 0.85 -0.1 311,658 - -0.4 311,671 - +0.3
Or see this region's nucleotide sequence