Experiment: L-Valine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4753 and PP_4754 are separated by 123 nucleotides PP_4754 and PP_4755 are separated by 129 nucleotides
PP_4753: PP_4753 - putative N-methylproline demethylase, at 5,408,839 to 5,410,875
_4753
PP_4754: PP_4754 - Transcriptional regulator, TetR family, at 5,410,999 to 5,411,646
_4754
PP_4755: PP_4755 - Outer membrane ferrichrome-iron receptor, at 5,411,776 to 5,414,169
_4755
Position (kb) 5410
5411
5412 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 5410.368 kb on - strand, within PP_4753 at 5410.427 kb on + strand, within PP_4753 at 5410.646 kb on + strand, within PP_4753 at 5410.647 kb on - strand, within PP_4753 at 5410.721 kb on - strand at 5410.721 kb on - strand at 5410.749 kb on - strand at 5410.758 kb on - strand at 5410.913 kb on + strand at 5410.913 kb on + strand at 5410.913 kb on + strand at 5410.913 kb on + strand at 5410.913 kb on + strand at 5410.914 kb on - strand at 5411.059 kb on - strand at 5411.059 kb on - strand at 5411.069 kb on - strand, within PP_4754 at 5411.248 kb on + strand, within PP_4754 at 5411.249 kb on - strand, within PP_4754 at 5411.249 kb on - strand, within PP_4754 at 5411.457 kb on + strand, within PP_4754 at 5411.476 kb on + strand, within PP_4754 at 5411.494 kb on + strand, within PP_4754 at 5411.495 kb on - strand, within PP_4754 at 5411.539 kb on + strand, within PP_4754 at 5411.539 kb on + strand, within PP_4754 at 5411.539 kb on + strand, within PP_4754 at 5411.539 kb on + strand, within PP_4754 at 5411.539 kb on + strand, within PP_4754 at 5411.540 kb on - strand, within PP_4754 at 5411.540 kb on - strand, within PP_4754 at 5411.540 kb on - strand, within PP_4754 at 5411.540 kb on - strand, within PP_4754 at 5411.561 kb on + strand, within PP_4754 at 5411.562 kb on - strand, within PP_4754 at 5411.562 kb on - strand, within PP_4754 at 5411.562 kb on - strand, within PP_4754 at 5411.645 kb on - strand at 5411.680 kb on + strand at 5411.681 kb on - strand at 5411.784 kb on + strand at 5411.784 kb on + strand at 5411.784 kb on + strand at 5411.784 kb on + strand at 5411.785 kb on - strand at 5411.785 kb on - strand at 5411.785 kb on - strand at 5411.786 kb on + strand at 5411.786 kb on + strand at 5411.786 kb on + strand at 5411.786 kb on + strand at 5411.787 kb on - strand at 5411.787 kb on - strand at 5411.787 kb on - strand at 5411.787 kb on - strand at 5411.787 kb on - strand at 5411.822 kb on + strand at 5411.826 kb on - strand at 5411.913 kb on - strand at 5411.959 kb on - strand at 5411.975 kb on + strand at 5411.975 kb on + strand at 5411.976 kb on - strand at 5411.976 kb on - strand at 5411.976 kb on - strand at 5411.976 kb on - strand at 5411.976 kb on - strand at 5411.978 kb on + strand at 5411.978 kb on + strand at 5411.979 kb on - strand at 5411.979 kb on - strand at 5411.990 kb on + strand at 5411.990 kb on + strand at 5411.991 kb on - strand at 5412.028 kb on + strand, within PP_4755 at 5412.028 kb on + strand, within PP_4755 at 5412.028 kb on + strand, within PP_4755 at 5412.029 kb on - strand, within PP_4755 at 5412.029 kb on - strand, within PP_4755 at 5412.029 kb on - strand, within PP_4755 at 5412.035 kb on + strand, within PP_4755 at 5412.035 kb on + strand, within PP_4755 at 5412.036 kb on - strand, within PP_4755 at 5412.036 kb on - strand, within PP_4755 at 5412.036 kb on - strand, within PP_4755 at 5412.036 kb on - strand, within PP_4755 at 5412.036 kb on - strand, within PP_4755 at 5412.036 kb on - strand, within PP_4755 at 5412.036 kb on - strand, within PP_4755 at 5412.038 kb on + strand, within PP_4755 at 5412.038 kb on + strand, within PP_4755 at 5412.038 kb on + strand, within PP_4755 at 5412.039 kb on - strand, within PP_4755 at 5412.084 kb on + strand, within PP_4755 at 5412.108 kb on - strand, within PP_4755 at 5412.140 kb on + strand, within PP_4755 at 5412.140 kb on + strand, within PP_4755 at 5412.140 kb on + strand, within PP_4755 at 5412.140 kb on + strand, within PP_4755 at 5412.141 kb on - strand, within PP_4755 at 5412.141 kb on - strand, within PP_4755 at 5412.141 kb on - strand, within PP_4755 at 5412.141 kb on - strand, within PP_4755 at 5412.146 kb on + strand, within PP_4755 at 5412.147 kb on - strand, within PP_4755 at 5412.147 kb on - strand, within PP_4755 at 5412.335 kb on + strand, within PP_4755 at 5412.335 kb on + strand, within PP_4755 at 5412.354 kb on - strand, within PP_4755 at 5412.376 kb on - strand, within PP_4755 at 5412.420 kb on - strand, within PP_4755 at 5412.444 kb on + strand, within PP_4755 at 5412.444 kb on + strand, within PP_4755 at 5412.444 kb on + strand, within PP_4755 at 5412.445 kb on - strand, within PP_4755 at 5412.446 kb on + strand, within PP_4755 at 5412.446 kb on + strand, within PP_4755 at 5412.446 kb on + strand, within PP_4755 at 5412.446 kb on + strand, within PP_4755 at 5412.446 kb on + strand, within PP_4755 at 5412.446 kb on + strand, within PP_4755 at 5412.446 kb on + strand, within PP_4755 at 5412.447 kb on - strand, within PP_4755 at 5412.447 kb on - strand, within PP_4755 at 5412.447 kb on - strand, within PP_4755 at 5412.447 kb on - strand, within PP_4755 at 5412.447 kb on - strand, within PP_4755 at 5412.447 kb on - strand, within PP_4755 at 5412.447 kb on - strand, within PP_4755 at 5412.447 kb on - strand, within PP_4755 at 5412.512 kb on + strand, within PP_4755 at 5412.512 kb on + strand, within PP_4755 at 5412.512 kb on + strand, within PP_4755 at 5412.512 kb on + strand, within PP_4755 at 5412.513 kb on - strand, within PP_4755 at 5412.513 kb on - strand, within PP_4755 at 5412.513 kb on - strand, within PP_4755 at 5412.513 kb on - strand, within PP_4755 at 5412.636 kb on + strand at 5412.638 kb on + strand, within PP_4755 at 5412.638 kb on + strand, within PP_4755
Per-strain Table
Position Strand Gene LocusTag Fraction L-Valine (C) remove 5,410,368 - PP_4753 0.75 -0.5 5,410,427 + PP_4753 0.78 -0.1 5,410,646 + PP_4753 0.89 +1.4 5,410,647 - PP_4753 0.89 +0.6 5,410,721 - -0.2 5,410,721 - +0.5 5,410,749 - +0.3 5,410,758 - +0.4 5,410,913 + -0.5 5,410,913 + -0.7 5,410,913 + +0.4 5,410,913 + +0.1 5,410,913 + +0.1 5,410,914 - +0.5 5,411,059 - -2.1 5,411,059 - -1.0 5,411,069 - PP_4754 0.11 -1.5 5,411,248 + PP_4754 0.38 -0.2 5,411,249 - PP_4754 0.39 -1.3 5,411,249 - PP_4754 0.39 -3.5 5,411,457 + PP_4754 0.71 -1.7 5,411,476 + PP_4754 0.74 -0.8 5,411,494 + PP_4754 0.76 -3.4 5,411,495 - PP_4754 0.77 -2.4 5,411,539 + PP_4754 0.83 -2.0 5,411,539 + PP_4754 0.83 -3.8 5,411,539 + PP_4754 0.83 -1.0 5,411,539 + PP_4754 0.83 -3.1 5,411,539 + PP_4754 0.83 -1.2 5,411,540 - PP_4754 0.83 -3.0 5,411,540 - PP_4754 0.83 -1.5 5,411,540 - PP_4754 0.83 -2.3 5,411,540 - PP_4754 0.83 -1.5 5,411,561 + PP_4754 0.87 -0.3 5,411,562 - PP_4754 0.87 -1.9 5,411,562 - PP_4754 0.87 -1.4 5,411,562 - PP_4754 0.87 -1.2 5,411,645 - +0.2 5,411,680 + +0.5 5,411,681 - +0.2 5,411,784 + +0.5 5,411,784 + +0.3 5,411,784 + -0.6 5,411,784 + +0.5 5,411,785 - +1.9 5,411,785 - -3.0 5,411,785 - +0.4 5,411,786 + -0.1 5,411,786 + +1.8 5,411,786 + -0.0 5,411,786 + +0.4 5,411,787 - -0.1 5,411,787 - -0.7 5,411,787 - +0.1 5,411,787 - +1.0 5,411,787 - +0.3 5,411,822 + +1.1 5,411,826 - -1.3 5,411,913 - +0.1 5,411,959 - +0.2 5,411,975 + +0.1 5,411,975 + +1.5 5,411,976 - +0.5 5,411,976 - -0.7 5,411,976 - -1.4 5,411,976 - -0.0 5,411,976 - +0.9 5,411,978 + -0.1 5,411,978 + -0.4 5,411,979 - -0.1 5,411,979 - -1.3 5,411,990 + +0.6 5,411,990 + -0.5 5,411,991 - +0.1 5,412,028 + PP_4755 0.11 -1.2 5,412,028 + PP_4755 0.11 +0.5 5,412,028 + PP_4755 0.11 -1.3 5,412,029 - PP_4755 0.11 +1.0 5,412,029 - PP_4755 0.11 -0.2 5,412,029 - PP_4755 0.11 -0.5 5,412,035 + PP_4755 0.11 +0.5 5,412,035 + PP_4755 0.11 +0.0 5,412,036 - PP_4755 0.11 -0.5 5,412,036 - PP_4755 0.11 -0.9 5,412,036 - PP_4755 0.11 +0.7 5,412,036 - PP_4755 0.11 +0.2 5,412,036 - PP_4755 0.11 -0.6 5,412,036 - PP_4755 0.11 +0.1 5,412,036 - PP_4755 0.11 -0.8 5,412,038 + PP_4755 0.11 -0.4 5,412,038 + PP_4755 0.11 +0.5 5,412,038 + PP_4755 0.11 -1.3 5,412,039 - PP_4755 0.11 +0.3 5,412,084 + PP_4755 0.13 +0.1 5,412,108 - PP_4755 0.14 +0.9 5,412,140 + PP_4755 0.15 +0.2 5,412,140 + PP_4755 0.15 -0.6 5,412,140 + PP_4755 0.15 +0.8 5,412,140 + PP_4755 0.15 -0.7 5,412,141 - PP_4755 0.15 +0.2 5,412,141 - PP_4755 0.15 -1.5 5,412,141 - PP_4755 0.15 +0.6 5,412,141 - PP_4755 0.15 -1.2 5,412,146 + PP_4755 0.15 +0.3 5,412,147 - PP_4755 0.15 -0.2 5,412,147 - PP_4755 0.15 +0.5 5,412,335 + PP_4755 0.23 +1.4 5,412,335 + PP_4755 0.23 +1.0 5,412,354 - PP_4755 0.24 -0.3 5,412,376 - PP_4755 0.25 +0.3 5,412,420 - PP_4755 0.27 -0.4 5,412,444 + PP_4755 0.28 -0.3 5,412,444 + PP_4755 0.28 -0.0 5,412,444 + PP_4755 0.28 -1.5 5,412,445 - PP_4755 0.28 -0.5 5,412,446 + PP_4755 0.28 +0.4 5,412,446 + PP_4755 0.28 +0.5 5,412,446 + PP_4755 0.28 -0.3 5,412,446 + PP_4755 0.28 -0.6 5,412,446 + PP_4755 0.28 +0.3 5,412,446 + PP_4755 0.28 -1.3 5,412,446 + PP_4755 0.28 -0.2 5,412,447 - PP_4755 0.28 -0.8 5,412,447 - PP_4755 0.28 +0.7 5,412,447 - PP_4755 0.28 +0.0 5,412,447 - PP_4755 0.28 +0.4 5,412,447 - PP_4755 0.28 +0.1 5,412,447 - PP_4755 0.28 +0.3 5,412,447 - PP_4755 0.28 +0.4 5,412,447 - PP_4755 0.28 -0.3 5,412,512 + PP_4755 0.31 +0.7 5,412,512 + PP_4755 0.31 +0.1 5,412,512 + PP_4755 0.31 +1.0 5,412,512 + PP_4755 0.31 -0.7 5,412,513 - PP_4755 0.31 +0.6 5,412,513 - PP_4755 0.31 +0.9 5,412,513 - PP_4755 0.31 +0.6 5,412,513 - PP_4755 0.31 -0.3 5,412,636 + -0.3 5,412,638 + PP_4755 0.36 -0.0 5,412,638 + PP_4755 0.36 -0.2
Or see this region's nucleotide sequence