Strain Fitness in Agrobacterium fabrum C58 around Atu3644

Experiment: D-(+)-Turanose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu3643 and Atu3644 are separated by 227 nucleotidesAtu3644 and Atu3645 are separated by 118 nucleotidesAtu3645 and Atu3646 overlap by 4 nucleotides Atu3643: Atu3643 - hypothetical protein, at 697,335 to 698,270 Atu3643 Atu3644: Atu3644 - hypothetical protein, at 698,498 to 698,953 Atu3644 Atu3645: Atu3645 - hypothetical protein, at 699,072 to 699,479 Atu3645 Atu3646: Atu3646 - hypothetical protein, at 699,476 to 699,901 Atu3646 Position (kb) 698 699Strain fitness (log2 ratio) -2 -1 0 1 2at 697.502 kb on + strand, within Atu3643at 697.547 kb on + strand, within Atu3643at 697.619 kb on + strand, within Atu3643at 697.654 kb on + strand, within Atu3643at 697.718 kb on - strand, within Atu3643at 697.745 kb on + strand, within Atu3643at 697.757 kb on + strand, within Atu3643at 697.789 kb on - strand, within Atu3643at 697.806 kb on - strand, within Atu3643at 697.878 kb on - strand, within Atu3643at 697.878 kb on - strand, within Atu3643at 697.922 kb on + strand, within Atu3643at 697.934 kb on + strand, within Atu3643at 697.984 kb on + strand, within Atu3643at 697.999 kb on - strand, within Atu3643at 698.026 kb on - strand, within Atu3643at 698.047 kb on - strand, within Atu3643at 698.066 kb on - strand, within Atu3643at 698.090 kb on - strand, within Atu3643at 698.110 kb on + strand, within Atu3643at 698.112 kb on + strand, within Atu3643at 698.112 kb on + strand, within Atu3643at 698.120 kb on - strand, within Atu3643at 698.130 kb on - strand, within Atu3643at 698.130 kb on - strand, within Atu3643at 698.159 kb on - strand, within Atu3643at 698.220 kb on - strandat 698.220 kb on - strandat 698.238 kb on - strandat 698.238 kb on - strandat 698.238 kb on - strandat 698.264 kb on + strandat 698.264 kb on + strandat 698.264 kb on + strandat 698.264 kb on + strandat 698.272 kb on - strandat 698.272 kb on - strandat 698.272 kb on - strandat 698.274 kb on + strandat 698.358 kb on + strandat 698.385 kb on - strandat 698.521 kb on + strandat 698.797 kb on + strand, within Atu3644at 698.864 kb on - strand, within Atu3644at 698.868 kb on + strand, within Atu3644at 698.868 kb on + strand, within Atu3644at 698.876 kb on - strand, within Atu3644at 698.876 kb on - strand, within Atu3644at 698.876 kb on - strand, within Atu3644at 698.969 kb on + strandat 699.037 kb on + strandat 699.038 kb on + strandat 699.045 kb on - strandat 699.069 kb on - strandat 699.076 kb on - strandat 699.147 kb on + strand, within Atu3645at 699.147 kb on + strand, within Atu3645at 699.178 kb on + strand, within Atu3645at 699.198 kb on + strand, within Atu3645at 699.198 kb on - strand, within Atu3645at 699.230 kb on + strand, within Atu3645at 699.254 kb on - strand, within Atu3645at 699.256 kb on + strand, within Atu3645at 699.275 kb on + strand, within Atu3645at 699.275 kb on + strand, within Atu3645at 699.473 kb on + strandat 699.474 kb on - strandat 699.502 kb on - strandat 699.542 kb on - strand, within Atu3646at 699.549 kb on + strand, within Atu3646at 699.549 kb on + strand, within Atu3646at 699.549 kb on + strand, within Atu3646at 699.549 kb on + strand, within Atu3646at 699.549 kb on + strand, within Atu3646at 699.557 kb on - strand, within Atu3646at 699.605 kb on + strand, within Atu3646at 699.607 kb on - strand, within Atu3646at 699.623 kb on - strand, within Atu3646at 699.623 kb on - strand, within Atu3646at 699.623 kb on - strand, within Atu3646at 699.659 kb on + strand, within Atu3646at 699.659 kb on + strand, within Atu3646at 699.659 kb on + strand, within Atu3646at 699.659 kb on + strand, within Atu3646at 699.667 kb on - strand, within Atu3646at 699.667 kb on - strand, within Atu3646at 699.667 kb on - strand, within Atu3646at 699.667 kb on - strand, within Atu3646at 699.667 kb on - strand, within Atu3646at 699.674 kb on + strand, within Atu3646at 699.684 kb on + strand, within Atu3646at 699.719 kb on + strand, within Atu3646at 699.727 kb on - strand, within Atu3646at 699.727 kb on - strand, within Atu3646at 699.732 kb on - strand, within Atu3646at 699.776 kb on + strand, within Atu3646at 699.776 kb on + strand, within Atu3646at 699.776 kb on + strand, within Atu3646at 699.784 kb on - strand, within Atu3646at 699.784 kb on - strand, within Atu3646at 699.870 kb on + strandat 699.938 kb on - strandat 699.938 kb on - strandat 699.940 kb on + strandat 699.940 kb on + strandat 699.948 kb on - strandat 699.948 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-(+)-Turanose (C)
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697,502 + Atu3643 0.18 +0.2
697,547 + Atu3643 0.23 +0.1
697,619 + Atu3643 0.30 +0.2
697,654 + Atu3643 0.34 -1.1
697,718 - Atu3643 0.41 -0.1
697,745 + Atu3643 0.44 -0.0
697,757 + Atu3643 0.45 +0.3
697,789 - Atu3643 0.49 +0.1
697,806 - Atu3643 0.50 +0.3
697,878 - Atu3643 0.58 -1.0
697,878 - Atu3643 0.58 +0.1
697,922 + Atu3643 0.63 +0.1
697,934 + Atu3643 0.64 -0.5
697,984 + Atu3643 0.69 +1.0
697,999 - Atu3643 0.71 +0.9
698,026 - Atu3643 0.74 +0.6
698,047 - Atu3643 0.76 +0.4
698,066 - Atu3643 0.78 +1.4
698,090 - Atu3643 0.81 +2.4
698,110 + Atu3643 0.83 -0.1
698,112 + Atu3643 0.83 -0.1
698,112 + Atu3643 0.83 +0.0
698,120 - Atu3643 0.84 +0.0
698,130 - Atu3643 0.85 +0.7
698,130 - Atu3643 0.85 -0.2
698,159 - Atu3643 0.88 -0.1
698,220 - +0.9
698,220 - +0.6
698,238 - +0.4
698,238 - -0.4
698,238 - +0.5
698,264 + -0.1
698,264 + -0.3
698,264 + -1.0
698,264 + +0.4
698,272 - +0.4
698,272 - -0.2
698,272 - -0.1
698,274 + +0.4
698,358 + +0.6
698,385 - -0.0
698,521 + +1.4
698,797 + Atu3644 0.66 +0.1
698,864 - Atu3644 0.80 +0.4
698,868 + Atu3644 0.81 -2.2
698,868 + Atu3644 0.81 +0.5
698,876 - Atu3644 0.83 +1.0
698,876 - Atu3644 0.83 +0.8
698,876 - Atu3644 0.83 +0.0
698,969 + -0.7
699,037 + -1.3
699,038 + +0.5
699,045 - -0.8
699,069 - -0.1
699,076 - +0.0
699,147 + Atu3645 0.18 -0.1
699,147 + Atu3645 0.18 +0.1
699,178 + Atu3645 0.26 +0.3
699,198 + Atu3645 0.31 +0.4
699,198 - Atu3645 0.31 +0.0
699,230 + Atu3645 0.39 -0.5
699,254 - Atu3645 0.45 +0.0
699,256 + Atu3645 0.45 +0.7
699,275 + Atu3645 0.50 +0.5
699,275 + Atu3645 0.50 -0.4
699,473 + +0.1
699,474 - +0.5
699,502 - +0.1
699,542 - Atu3646 0.15 +0.3
699,549 + Atu3646 0.17 -0.5
699,549 + Atu3646 0.17 -0.3
699,549 + Atu3646 0.17 +0.0
699,549 + Atu3646 0.17 -0.3
699,549 + Atu3646 0.17 +0.1
699,557 - Atu3646 0.19 +0.7
699,605 + Atu3646 0.30 -0.2
699,607 - Atu3646 0.31 +0.8
699,623 - Atu3646 0.35 +0.5
699,623 - Atu3646 0.35 -0.3
699,623 - Atu3646 0.35 +0.5
699,659 + Atu3646 0.43 -0.6
699,659 + Atu3646 0.43 -0.1
699,659 + Atu3646 0.43 +0.2
699,659 + Atu3646 0.43 +0.4
699,667 - Atu3646 0.45 -0.4
699,667 - Atu3646 0.45 +0.6
699,667 - Atu3646 0.45 -0.2
699,667 - Atu3646 0.45 +1.4
699,667 - Atu3646 0.45 -0.1
699,674 + Atu3646 0.46 -0.3
699,684 + Atu3646 0.49 -0.7
699,719 + Atu3646 0.57 -0.3
699,727 - Atu3646 0.59 -0.0
699,727 - Atu3646 0.59 -0.1
699,732 - Atu3646 0.60 -0.3
699,776 + Atu3646 0.70 +0.9
699,776 + Atu3646 0.70 -0.1
699,776 + Atu3646 0.70 -0.2
699,784 - Atu3646 0.72 +0.6
699,784 - Atu3646 0.72 +0.1
699,870 + -0.4
699,938 - -0.5
699,938 - -0.3
699,940 + +0.3
699,940 + +0.1
699,948 - +0.2
699,948 - +0.5

Or see this region's nucleotide sequence