Strain Fitness in Pseudomonas putida KT2440

Strain Fitness in Pseudomonas putida KT2440 around PP_1579

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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Per-strain Table

Position	Strand	LocusTag	Fraction	L-Proline (C)
				remove
1,768,344	-			+1.4
1,768,385	+			-0.2
1,768,421	+			+0.6
1,768,421	+			+0.8
1,768,422	-			+0.9
1,768,422	-			+1.2
1,768,422	-			+1.1
1,768,484	+	PP_1578	0.17	+0.5
1,768,484	+	PP_1578	0.17	-2.5
1,768,485	-	PP_1578	0.18	+2.2
1,768,485	-	PP_1578	0.18	-2.6
1,768,485	-	PP_1578	0.18	+1.1
1,768,620	+	PP_1578	0.46	+0.3
1,768,703	+	PP_1578	0.63	+0.2
1,768,704	-	PP_1578	0.63	+0.8
1,768,704	-	PP_1578	0.63	+1.1
1,768,704	-	PP_1578	0.63	+0.8
1,768,704	-	PP_1578	0.63	-1.1
1,768,802	+	PP_1578	0.84	+0.9
1,768,837	+			+1.2
1,768,837	+			+1.2
1,768,837	+			+0.7
1,768,838	-			+1.7
1,768,838	-			+0.6
1,768,838	-			+0.5
1,768,841	+			+3.0
1,768,842	-			+0.7
1,768,842	-			-1.2
1,768,842	-			+0.3
1,768,842	-			+0.5
1,768,872	-			+2.1
1,768,875	+			+0.4
1,768,876	-			+1.1
1,768,876	-			-0.2
1,768,887	+			+1.9
1,768,891	+			-0.5
1,768,891	+			+1.2
1,768,892	-			-0.1
1,768,892	-			+0.8
1,768,892	-			+0.1
1,768,892	-			+0.9
1,768,945	+	PP_5475	0.18	-0.6
1,769,108	-	PP_5475	0.61	-0.3
1,769,245	+			-0.2
1,769,245	+			+0.5
1,769,248	+			+1.0
1,769,458	+			+0.7
1,769,664	+	PP_1579	0.14	+1.2
1,769,665	-	PP_1579	0.14	+0.6
1,769,671	+	PP_1579	0.14	+1.0
1,769,671	+	PP_1579	0.14	-0.2
1,769,671	+	PP_1579	0.14	-0.2
1,769,671	+	PP_1579	0.14	+1.6
1,769,671	+	PP_1579	0.14	+0.4
1,769,671	+	PP_1579	0.14	-0.0
1,769,671	+	PP_1579	0.14	-0.1
1,769,672	-	PP_1579	0.14	+0.6
1,769,672	-	PP_1579	0.14	+1.2
1,769,672	-	PP_1579	0.14	+0.4
1,769,672	-	PP_1579	0.14	+0.4
1,769,672	-	PP_1579	0.14	+1.7
1,769,672	-	PP_1579	0.14	+1.9
1,769,682	+	PP_1579	0.14	-0.0
1,769,683	-	PP_1579	0.14	+0.5
1,769,841	+	PP_1579	0.20	-1.1
1,769,890	-	PP_1579	0.21	+0.8
1,769,935	+	PP_1579	0.23	+0.8
1,769,936	-	PP_1579	0.23	+1.4
1,769,936	-			+1.1
1,769,972	-	PP_1579	0.24	-0.1
1,770,065	+	PP_1579	0.27	+1.3
1,770,066	-	PP_1579	0.27	+0.7
1,770,087	+	PP_1579	0.28	+1.4
1,770,088	-	PP_1579	0.28	+1.8
1,770,088	-			-1.2
1,770,088	-	PP_1579	0.28	+0.9
1,770,189	+	PP_1579	0.31	+0.2
1,770,210	+	PP_1579	0.32	+1.1
1,770,211	-	PP_1579	0.32	+0.0
1,770,219	+	PP_1579	0.32	+0.6
1,770,288	+	PP_1579	0.34	+0.5
1,770,288	+	PP_1579	0.34	+1.6
1,770,288	+	PP_1579	0.34	-0.1
1,770,320	+	PP_1579	0.36	-0.0
1,770,320	+	PP_1579	0.36	+1.2
1,770,320	+	PP_1579	0.36	+1.0
1,770,321	-	PP_1579	0.36	+0.4
1,770,321	-	PP_1579	0.36	+0.2
1,770,321	-	PP_1579	0.36	+0.4
1,770,327	+	PP_1579	0.36	+0.8
1,770,367	-	PP_1579	0.37	+0.9
1,770,367	-	PP_1579	0.37	+0.1
1,770,540	+	PP_1579	0.43	+1.1
1,770,540	+	PP_1579	0.43	+0.6
1,770,541	-	PP_1579	0.43	+2.2
1,770,588	+	PP_1579	0.45	+0.6
1,770,588	+	PP_1579	0.45	+0.9
1,770,589	-	PP_1579	0.45	+0.9
1,770,589	-	PP_1579	0.45	+0.3
1,770,604	-	PP_1579	0.45	+0.3
1,770,604	-	PP_1579	0.45	+0.6
1,770,885	+	PP_1579	0.54	+0.1
1,770,909	+	PP_1579	0.55	+0.5
1,770,909	+	PP_1579	0.55	+0.4
1,770,909	+	PP_1579	0.55	+1.5
1,770,909	+	PP_1579	0.55	+0.2
1,771,062	+	PP_1579	0.60	-0.2
1,771,062	+	PP_1579	0.60	+0.4
1,771,063	-	PP_1579	0.60	-1.1
1,771,119	-	PP_1579	0.62	+1.1
1,771,119	-	PP_1579	0.62	+1.5
1,771,134	+	PP_1579	0.63	-0.1
1,771,134	+	PP_1579	0.63	+0.5
1,771,135	-	PP_1579	0.63	+0.4
1,771,135	-	PP_1579	0.63	+0.6
1,771,140	+	PP_1579	0.63	+2.2
1,771,355	+	PP_1579	0.70	+1.3
1,771,356	-			+0.8
1,771,356	-	PP_1579	0.70	+1.3
1,771,356	-	PP_1579	0.70	+1.3
1,771,356	-	PP_1579	0.70	+0.6
1,771,423	-	PP_1579	0.72	+1.1
1,771,493	+	PP_1579	0.75	+0.9
1,771,538	-	PP_1579	0.76	-0.2
1,771,633	-	PP_1579	0.79	+0.9
1,771,633	-	PP_1579	0.79	-0.4
1,771,772	+	PP_1579	0.84	+1.8
1,771,797	+	PP_1579	0.85	+2.0
1,771,830	+	PP_1579	0.86	+0.7
1,771,831	-	PP_1579	0.86	+1.1
1,771,831	-	PP_1579	0.86	+1.6
1,771,867	+	PP_1579	0.87	+0.2
1,771,867	+	PP_1579	0.87	+1.8
1,772,038	-			+0.9
1,772,206	-			+2.0
1,772,217	+			-1.4
1,772,217	+			+1.1
1,772,221	-			+0.6
1,772,250	+			+0.3
1,772,251	-			-0.0
1,772,251	-			+0.4
1,772,251	-			+0.3
1,772,251	-			+1.5
1,772,277	-			+0.6
1,772,307	+			+0.2
1,772,365	+	PP_1580	0.23	+1.2
1,772,366	-	PP_1580	0.23	+1.7
1,772,526	+	PP_1580	0.58	+1.0
1,772,526	+	PP_1580	0.58	-0.0
1,772,526	+	PP_1580	0.58	+0.6
1,772,527	-	PP_1580	0.58	+1.5
1,772,527	-	PP_1580	0.58	+1.5
1,772,527	-	PP_1580	0.58	+1.5
1,772,527	-	PP_1580	0.58	+0.6
1,772,528	+	PP_1580	0.58	+0.9
1,772,529	-	PP_1580	0.59	+2.6
1,772,551	-	PP_1580	0.63	+0.0
1,772,551	-	PP_1580	0.63	+0.7
1,772,580	-	PP_1580	0.70	+0.8
1,772,580	-	PP_1580	0.70	+1.2
1,772,580	-	PP_1580	0.70	+0.5
1,772,580	-	PP_1580	0.70	-0.8
1,772,580	-	PP_1580	0.70	+0.8
1,772,659	+	PP_1580	0.87	+0.3
1,772,659	+	PP_1580	0.87	+1.3
1,772,659	+	PP_1580	0.87	+0.7
1,772,659	+	PP_1580	0.87	+0.9
1,772,660	-	PP_1580	0.87	+0.4
1,772,660	-	PP_1580	0.87	+1.5
1,772,662	+	PP_1580	0.88	-3.0
1,772,662	+	PP_1580	0.88	+1.0
1,772,663	-	PP_1580	0.88	+0.8
1,772,663	-	PP_1580	0.88	+0.4
1,772,663	-	PP_1580	0.88	+0.8
1,772,663	-	PP_1580	0.88	+0.6
1,772,715	+			+2.0
1,772,716	-			+0.3
1,772,716	-			+0.4
1,772,716	-			+1.8
1,772,729	-			+0.6
1,772,836	-			+0.4
1,772,874	+			-0.1
1,772,948	-			+1.3
1,772,953	+			+2.1
1,772,953	+			-2.0
1,772,954	-			+1.0
1,772,954	-			+1.9
1,772,954	-			-2.8
1,772,954	-			+0.9
1,772,968	-			-0.0
1,773,096	+			+3.0
1,773,097	-	PP_1581	0.14	+0.8
1,773,099	+	PP_1581	0.14	+1.0
1,773,099	+	PP_1581	0.14	+1.4
1,773,099	+	PP_1581	0.14	+0.7
1,773,099	+	PP_1581	0.14	+0.6
1,773,100	-	PP_1581	0.14	+1.3
1,773,100	-	PP_1581	0.14	-0.3
1,773,109	+	PP_1581	0.15	+0.4
1,773,109	+	PP_1581	0.15	+0.5
1,773,170	+	PP_1581	0.18	+0.5
1,773,206	-	PP_1581	0.19	+0.9
1,773,219	+	PP_1581	0.20	-0.0
1,773,219	+	PP_1581	0.20	+0.8
1,773,220	-	PP_1581	0.20	+1.8

Or see this region's nucleotide sequence