Strain Fitness in Agrobacterium fabrum C58 around Atu8115

Experiment: D-(+)-Turanose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0040 and Atu0041 are separated by 1 nucleotidesAtu0041 and Atu8115 are separated by 1 nucleotidesAtu8115 and Atu0043 are separated by 22 nucleotidesAtu0043 and Atu0044 are separated by 242 nucleotides Atu0040: Atu0040 - phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase, at 41,891 to 42,634 Atu0040 Atu0041: Atu0041 - glutamine amidotransferase, at 42,636 to 43,286 Atu0041 Atu8115: Atu8115 - Hypothetical Protein, at 43,288 to 43,782 Atu8115 Atu0043: Atu0043 - imidazoleglycerol-phosphate dehydratase, at 43,805 to 44,401 Atu0043 Atu0044: Atu0044 - heat shock protein hslV, at 44,644 to 45,126 Atu0044 Position (kb) 43 44Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 42.309 kb on - strand, within Atu0040at 42.649 kb on - strandat 42.668 kb on + strandat 42.740 kb on - strand, within Atu0041at 42.958 kb on + strand, within Atu0041at 42.990 kb on - strand, within Atu0041at 43.103 kb on - strand, within Atu0041at 43.381 kb on - strand, within Atu8115at 43.393 kb on + strand, within Atu8115at 43.395 kb on + strand, within Atu8115at 43.431 kb on + strand, within Atu8115at 43.432 kb on + strand, within Atu8115at 43.617 kb on - strand, within Atu8115at 43.668 kb on + strand, within Atu8115at 43.668 kb on + strand, within Atu8115at 43.668 kb on + strand, within Atu8115at 43.668 kb on + strand, within Atu8115at 43.668 kb on + strand, within Atu8115at 43.668 kb on + strand, within Atu8115at 43.675 kb on - strand, within Atu8115at 43.676 kb on - strand, within Atu8115at 43.676 kb on - strand, within Atu8115at 43.676 kb on - strand, within Atu8115at 43.676 kb on - strand, within Atu8115at 43.676 kb on - strand, within Atu8115at 43.694 kb on + strand, within Atu8115at 43.796 kb on + strandat 43.817 kb on + strandat 43.942 kb on + strand, within Atu0043at 44.052 kb on + strand, within Atu0043at 44.128 kb on + strand, within Atu0043at 44.128 kb on + strand, within Atu0043at 44.286 kb on - strand, within Atu0043at 44.385 kb on + strandat 44.386 kb on - strandat 44.442 kb on - strandat 44.470 kb on - strandat 44.478 kb on - strandat 44.529 kb on + strandat 44.529 kb on + strandat 44.537 kb on - strandat 44.539 kb on + strandat 44.539 kb on + strandat 44.549 kb on + strandat 44.579 kb on - strandat 44.641 kb on - strandat 44.666 kb on + strandat 44.666 kb on + strandat 44.666 kb on + strandat 44.674 kb on - strandat 44.730 kb on - strand, within Atu0044at 44.762 kb on + strand, within Atu0044at 44.770 kb on - strand, within Atu0044

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Per-strain Table

Position Strand Gene LocusTag Fraction D-(+)-Turanose (C)
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42,309 - Atu0040 0.56 -3.1
42,649 - -4.8
42,668 + -1.8
42,740 - Atu0041 0.16 -2.1
42,958 + Atu0041 0.49 -2.2
42,990 - Atu0041 0.54 +0.7
43,103 - Atu0041 0.72 -2.4
43,381 - Atu8115 0.19 +0.6
43,393 + Atu8115 0.21 -0.4
43,395 + Atu8115 0.22 -0.6
43,431 + Atu8115 0.29 -0.2
43,432 + Atu8115 0.29 -0.4
43,617 - Atu8115 0.66 -0.6
43,668 + Atu8115 0.77 -2.2
43,668 + Atu8115 0.77 -2.1
43,668 + Atu8115 0.77 +0.7
43,668 + Atu8115 0.77 -2.7
43,668 + Atu8115 0.77 -2.4
43,668 + Atu8115 0.77 -3.2
43,675 - Atu8115 0.78 -3.1
43,676 - Atu8115 0.78 -3.5
43,676 - Atu8115 0.78 -4.0
43,676 - Atu8115 0.78 -3.9
43,676 - Atu8115 0.78 -0.6
43,676 - Atu8115 0.78 -3.3
43,694 + Atu8115 0.82 -0.6
43,796 + -2.1
43,817 + -4.7
43,942 + Atu0043 0.23 -3.3
44,052 + Atu0043 0.41 -1.1
44,128 + Atu0043 0.54 -1.1
44,128 + Atu0043 0.54 -3.8
44,286 - Atu0043 0.81 -1.8
44,385 + -2.4
44,386 - -1.9
44,442 - -0.3
44,470 - +0.3
44,478 - +0.3
44,529 + -0.9
44,529 + +1.7
44,537 - -0.5
44,539 + -0.3
44,539 + -0.3
44,549 + +0.3
44,579 - -0.4
44,641 - -0.4
44,666 + -0.1
44,666 + -0.8
44,666 + -0.1
44,674 - +0.4
44,730 - Atu0044 0.18 -0.9
44,762 + Atu0044 0.24 +0.3
44,770 - Atu0044 0.26 -0.1

Or see this region's nucleotide sequence