Strain Fitness in Agrobacterium fabrum C58 around Atu3885

Experiment: D-(+)-Turanose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu3884 and Atu3885 are separated by 317 nucleotidesAtu3885 and Atu3886 are separated by 21 nucleotides Atu3884: Atu3884 - hypothetical protein, at 978,660 to 979,544 Atu3884 Atu3885: Atu3885 - inositol monophosphatase, at 979,862 to 980,638 Atu3885 Atu3886: Atu3886 - lysophospholipase, at 980,660 to 981,601 Atu3886 Position (kb) 979 980 981Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 978.893 kb on + strand, within Atu3884at 978.906 kb on - strand, within Atu3884at 978.941 kb on + strand, within Atu3884at 979.032 kb on + strand, within Atu3884at 979.037 kb on + strand, within Atu3884at 979.079 kb on + strand, within Atu3884at 979.079 kb on + strand, within Atu3884at 979.091 kb on + strand, within Atu3884at 979.118 kb on - strand, within Atu3884at 979.143 kb on - strand, within Atu3884at 979.286 kb on - strand, within Atu3884at 979.316 kb on + strand, within Atu3884at 979.391 kb on + strand, within Atu3884at 979.397 kb on + strand, within Atu3884at 979.617 kb on + strandat 979.631 kb on + strandat 979.688 kb on - strandat 979.778 kb on + strandat 979.786 kb on + strandat 980.033 kb on - strand, within Atu3885at 980.042 kb on - strand, within Atu3885at 980.169 kb on + strand, within Atu3885at 980.177 kb on - strand, within Atu3885at 980.202 kb on + strand, within Atu3885at 980.215 kb on - strand, within Atu3885at 980.334 kb on - strand, within Atu3885at 980.334 kb on - strand, within Atu3885at 980.427 kb on + strand, within Atu3885at 980.435 kb on - strand, within Atu3885at 980.437 kb on + strand, within Atu3885at 980.482 kb on + strand, within Atu3885at 980.541 kb on + strand, within Atu3885at 980.590 kb on + strandat 980.758 kb on - strand, within Atu3886at 980.759 kb on + strand, within Atu3886at 980.799 kb on + strand, within Atu3886at 980.840 kb on - strand, within Atu3886at 980.895 kb on - strand, within Atu3886at 980.905 kb on - strand, within Atu3886at 980.910 kb on - strand, within Atu3886at 980.942 kb on - strand, within Atu3886at 980.993 kb on - strand, within Atu3886at 981.034 kb on + strand, within Atu3886at 981.051 kb on + strand, within Atu3886at 981.054 kb on - strand, within Atu3886at 981.054 kb on - strand, within Atu3886at 981.079 kb on - strand, within Atu3886at 981.079 kb on - strand, within Atu3886at 981.151 kb on + strand, within Atu3886at 981.366 kb on - strand, within Atu3886at 981.488 kb on - strand, within Atu3886at 981.504 kb on + strand, within Atu3886at 981.514 kb on + strandat 981.544 kb on - strandat 981.569 kb on + strandat 981.577 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-(+)-Turanose (C)
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978,893 + Atu3884 0.26 -0.2
978,906 - Atu3884 0.28 +0.4
978,941 + Atu3884 0.32 -0.1
979,032 + Atu3884 0.42 -0.8
979,037 + Atu3884 0.43 -0.2
979,079 + Atu3884 0.47 +0.8
979,079 + Atu3884 0.47 +0.1
979,091 + Atu3884 0.49 -0.2
979,118 - Atu3884 0.52 +0.9
979,143 - Atu3884 0.55 +0.3
979,286 - Atu3884 0.71 +0.5
979,316 + Atu3884 0.74 +0.2
979,391 + Atu3884 0.83 +0.3
979,397 + Atu3884 0.83 +0.0
979,617 + -0.6
979,631 + -1.0
979,688 - -0.8
979,778 + -0.6
979,786 + +0.5
980,033 - Atu3885 0.22 -2.4
980,042 - Atu3885 0.23 -4.9
980,169 + Atu3885 0.40 -1.4
980,177 - Atu3885 0.41 -6.7
980,202 + Atu3885 0.44 -4.0
980,215 - Atu3885 0.45 -2.1
980,334 - Atu3885 0.61 -3.8
980,334 - Atu3885 0.61 -0.4
980,427 + Atu3885 0.73 -2.5
980,435 - Atu3885 0.74 -2.0
980,437 + Atu3885 0.74 -4.6
980,482 + Atu3885 0.80 -4.0
980,541 + Atu3885 0.87 -1.0
980,590 + -1.0
980,758 - Atu3886 0.10 -0.0
980,759 + Atu3886 0.11 -0.3
980,799 + Atu3886 0.15 -0.0
980,840 - Atu3886 0.19 +0.6
980,895 - Atu3886 0.25 -0.4
980,905 - Atu3886 0.26 -0.5
980,910 - Atu3886 0.27 +0.0
980,942 - Atu3886 0.30 -0.9
980,993 - Atu3886 0.35 -0.8
981,034 + Atu3886 0.40 +0.5
981,051 + Atu3886 0.42 +0.6
981,054 - Atu3886 0.42 -0.0
981,054 - Atu3886 0.42 -0.1
981,079 - Atu3886 0.44 -0.5
981,079 - Atu3886 0.44 +0.4
981,151 + Atu3886 0.52 -0.2
981,366 - Atu3886 0.75 -1.0
981,488 - Atu3886 0.88 -0.7
981,504 + Atu3886 0.90 +1.6
981,514 + -0.1
981,544 - -1.1
981,569 + +0.0
981,577 - +1.2

Or see this region's nucleotide sequence