Strain Fitness in Agrobacterium fabrum C58 around Atu3342

Experiment: D-(+)-Turanose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu3341 and Atu3342 are separated by 57 nucleotidesAtu3342 and Atu3343 are separated by 6 nucleotides Atu3341: Atu3341 - trehalose/maltose ABC transporter ATPase, at 375,622 to 376,650 Atu3341 Atu3342: Atu3342 - trehalose utilization-like protein, at 376,708 to 377,493 Atu3342 Atu3343: Atu3343 - trehalose utilization-like protein, at 377,500 to 378,549 Atu3343 Position (kb) 376 377 378Strain fitness (log2 ratio) -3 -2 -1 0 1at 375.756 kb on + strand, within Atu3341at 375.885 kb on + strand, within Atu3341at 375.981 kb on - strand, within Atu3341at 375.987 kb on + strand, within Atu3341at 375.998 kb on + strand, within Atu3341at 376.006 kb on - strand, within Atu3341at 376.073 kb on + strand, within Atu3341at 376.081 kb on - strand, within Atu3341at 376.201 kb on + strand, within Atu3341at 376.203 kb on - strand, within Atu3341at 376.206 kb on + strand, within Atu3341at 376.230 kb on + strand, within Atu3341at 376.630 kb on + strandat 376.729 kb on - strandat 376.799 kb on - strand, within Atu3342at 376.833 kb on - strand, within Atu3342at 376.859 kb on + strand, within Atu3342at 376.944 kb on + strand, within Atu3342at 376.984 kb on + strand, within Atu3342at 376.985 kb on + strand, within Atu3342at 376.998 kb on - strand, within Atu3342at 377.163 kb on + strand, within Atu3342at 377.171 kb on - strand, within Atu3342at 377.228 kb on - strand, within Atu3342at 377.307 kb on - strand, within Atu3342at 377.393 kb on + strand, within Atu3342at 377.459 kb on + strandat 377.461 kb on - strandat 377.461 kb on - strandat 377.490 kb on - strandat 377.618 kb on + strand, within Atu3343at 377.654 kb on - strand, within Atu3343at 377.858 kb on - strand, within Atu3343at 377.894 kb on - strand, within Atu3343at 377.958 kb on - strand, within Atu3343at 378.025 kb on + strand, within Atu3343at 378.075 kb on - strand, within Atu3343at 378.123 kb on + strand, within Atu3343at 378.131 kb on - strand, within Atu3343at 378.131 kb on - strand, within Atu3343at 378.251 kb on - strand, within Atu3343at 378.269 kb on + strand, within Atu3343at 378.273 kb on + strand, within Atu3343at 378.299 kb on - strand, within Atu3343at 378.329 kb on + strand, within Atu3343

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Per-strain Table

Position Strand Gene LocusTag Fraction D-(+)-Turanose (C)
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375,756 + Atu3341 0.13 -0.7
375,885 + Atu3341 0.26 -1.2
375,981 - Atu3341 0.35 -1.3
375,987 + Atu3341 0.35 -0.4
375,998 + Atu3341 0.37 -0.6
376,006 - Atu3341 0.37 -1.2
376,073 + Atu3341 0.44 -0.7
376,081 - Atu3341 0.45 -2.1
376,201 + Atu3341 0.56 -1.0
376,203 - Atu3341 0.56 -1.4
376,206 + Atu3341 0.57 -1.1
376,230 + Atu3341 0.59 -1.0
376,630 + -0.4
376,729 - -2.3
376,799 - Atu3342 0.12 -1.8
376,833 - Atu3342 0.16 -2.7
376,859 + Atu3342 0.19 -1.0
376,944 + Atu3342 0.30 -1.4
376,984 + Atu3342 0.35 -0.7
376,985 + Atu3342 0.35 -0.8
376,998 - Atu3342 0.37 -1.1
377,163 + Atu3342 0.58 -3.0
377,171 - Atu3342 0.59 -2.2
377,228 - Atu3342 0.66 -1.4
377,307 - Atu3342 0.76 -2.3
377,393 + Atu3342 0.87 -1.3
377,459 + -1.2
377,461 - -1.6
377,461 - -1.4
377,490 - -1.7
377,618 + Atu3343 0.11 -1.8
377,654 - Atu3343 0.15 -0.9
377,858 - Atu3343 0.34 -1.5
377,894 - Atu3343 0.38 -2.7
377,958 - Atu3343 0.44 -0.7
378,025 + Atu3343 0.50 -1.1
378,075 - Atu3343 0.55 -1.6
378,123 + Atu3343 0.59 -1.4
378,131 - Atu3343 0.60 -1.1
378,131 - Atu3343 0.60 -2.0
378,251 - Atu3343 0.72 -1.9
378,269 + Atu3343 0.73 -0.4
378,273 + Atu3343 0.74 -2.5
378,299 - Atu3343 0.76 -2.7
378,329 + Atu3343 0.79 -2.5

Or see this region's nucleotide sequence