Strain Fitness in Agrobacterium fabrum C58 around Atu3338

Experiment: D-(+)-Turanose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu3337 and Atu3338 are separated by 268 nucleotidesAtu3338 and Atu3339 are separated by 63 nucleotides Atu3337: Atu3337 - LacI family transcriptional regulator, at 371,196 to 372,209 Atu3337 Atu3338: Atu3338 - trehalose/maltose ABC transporter substrate-binding protein, at 372,478 to 373,743 Atu3338 Atu3339: Atu3339 - trehalose/maltose ABC transporter permease, at 373,807 to 374,781 Atu3339 Position (kb) 372 373 374Strain fitness (log2 ratio) -2 -1 0 1at 371.573 kb on + strand, within Atu3337at 371.573 kb on + strand, within Atu3337at 371.692 kb on + strand, within Atu3337at 371.695 kb on - strand, within Atu3337at 371.712 kb on + strand, within Atu3337at 371.777 kb on - strand, within Atu3337at 371.784 kb on + strand, within Atu3337at 371.784 kb on + strand, within Atu3337at 371.805 kb on - strand, within Atu3337at 371.822 kb on - strand, within Atu3337at 371.906 kb on + strand, within Atu3337at 371.934 kb on + strand, within Atu3337at 371.958 kb on - strand, within Atu3337at 371.965 kb on + strand, within Atu3337at 372.012 kb on + strand, within Atu3337at 372.032 kb on + strand, within Atu3337at 372.037 kb on + strand, within Atu3337at 372.037 kb on + strand, within Atu3337at 372.045 kb on - strand, within Atu3337at 372.045 kb on - strand, within Atu3337at 372.131 kb on + strandat 372.131 kb on + strandat 372.131 kb on + strandat 372.131 kb on + strandat 372.131 kb on + strandat 372.131 kb on + strandat 372.131 kb on + strandat 372.131 kb on + strandat 372.139 kb on - strandat 372.139 kb on - strandat 372.139 kb on - strandat 372.157 kb on - strandat 372.478 kb on - strandat 372.632 kb on + strand, within Atu3338at 372.744 kb on + strand, within Atu3338at 372.752 kb on - strand, within Atu3338at 372.902 kb on - strand, within Atu3338at 372.952 kb on + strand, within Atu3338at 373.020 kb on - strand, within Atu3338at 373.035 kb on - strand, within Atu3338at 373.056 kb on - strand, within Atu3338at 373.076 kb on - strand, within Atu3338at 373.162 kb on + strand, within Atu3338at 373.229 kb on + strand, within Atu3338at 373.229 kb on + strand, within Atu3338at 373.237 kb on - strand, within Atu3338at 373.269 kb on + strand, within Atu3338at 373.356 kb on - strand, within Atu3338at 373.463 kb on + strand, within Atu3338at 373.540 kb on + strand, within Atu3338at 373.580 kb on + strand, within Atu3338at 373.595 kb on + strand, within Atu3338at 373.638 kb on + strandat 373.638 kb on + strandat 373.638 kb on + strandat 373.646 kb on - strandat 373.651 kb on + strandat 373.651 kb on + strandat 373.706 kb on + strandat 373.714 kb on - strandat 373.714 kb on - strandat 373.737 kb on - strandat 373.822 kb on + strandat 373.962 kb on - strand, within Atu3339at 374.032 kb on - strand, within Atu3339at 374.032 kb on - strand, within Atu3339at 374.032 kb on - strand, within Atu3339at 374.096 kb on + strand, within Atu3339at 374.221 kb on - strand, within Atu3339at 374.254 kb on + strand, within Atu3339at 374.262 kb on - strand, within Atu3339at 374.286 kb on + strand, within Atu3339at 374.315 kb on + strand, within Atu3339at 374.467 kb on - strand, within Atu3339at 374.492 kb on - strand, within Atu3339at 374.572 kb on - strand, within Atu3339at 374.592 kb on + strand, within Atu3339at 374.622 kb on + strand, within Atu3339at 374.622 kb on + strand, within Atu3339at 374.630 kb on - strand, within Atu3339at 374.630 kb on - strand, within Atu3339

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Per-strain Table

Position Strand Gene LocusTag Fraction D-(+)-Turanose (C)
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371,573 + Atu3337 0.37 +0.1
371,573 + Atu3337 0.37 -1.1
371,692 + Atu3337 0.49 -0.4
371,695 - Atu3337 0.49 +0.1
371,712 + Atu3337 0.51 +0.8
371,777 - Atu3337 0.57 +0.1
371,784 + Atu3337 0.58 +0.3
371,784 + Atu3337 0.58 -0.9
371,805 - Atu3337 0.60 +0.4
371,822 - Atu3337 0.62 -0.5
371,906 + Atu3337 0.70 -0.3
371,934 + Atu3337 0.73 -1.0
371,958 - Atu3337 0.75 +0.1
371,965 + Atu3337 0.76 -0.1
372,012 + Atu3337 0.80 -0.6
372,032 + Atu3337 0.82 -0.2
372,037 + Atu3337 0.83 -0.1
372,037 + Atu3337 0.83 +0.2
372,045 - Atu3337 0.84 -1.5
372,045 - Atu3337 0.84 -0.6
372,131 + +0.2
372,131 + -0.2
372,131 + -0.1
372,131 + -0.1
372,131 + -0.5
372,131 + +0.4
372,131 + -0.4
372,131 + -0.9
372,139 - +0.2
372,139 - -0.0
372,139 - -0.2
372,157 - +1.5
372,478 - -1.1
372,632 + Atu3338 0.12 -1.3
372,744 + Atu3338 0.21 -1.2
372,752 - Atu3338 0.22 -1.4
372,902 - Atu3338 0.33 -2.2
372,952 + Atu3338 0.37 -1.1
373,020 - Atu3338 0.43 -1.5
373,035 - Atu3338 0.44 -0.8
373,056 - Atu3338 0.46 -1.7
373,076 - Atu3338 0.47 -1.7
373,162 + Atu3338 0.54 -0.5
373,229 + Atu3338 0.59 -1.0
373,229 + Atu3338 0.59 -0.6
373,237 - Atu3338 0.60 -1.2
373,269 + Atu3338 0.62 -1.1
373,356 - Atu3338 0.69 -2.6
373,463 + Atu3338 0.78 -0.9
373,540 + Atu3338 0.84 -0.7
373,580 + Atu3338 0.87 -1.1
373,595 + Atu3338 0.88 -0.8
373,638 + -0.7
373,638 + -0.4
373,638 + -0.6
373,646 - -0.4
373,651 + -0.5
373,651 + -0.5
373,706 + -1.9
373,714 - -0.1
373,714 - -1.9
373,737 - -1.5
373,822 + -1.0
373,962 - Atu3339 0.16 -0.5
374,032 - Atu3339 0.23 -1.0
374,032 - Atu3339 0.23 -1.3
374,032 - Atu3339 0.23 -1.3
374,096 + Atu3339 0.30 -0.4
374,221 - Atu3339 0.42 -1.4
374,254 + Atu3339 0.46 -0.4
374,262 - Atu3339 0.47 -1.1
374,286 + Atu3339 0.49 -0.3
374,315 + Atu3339 0.52 -1.7
374,467 - Atu3339 0.68 +0.2
374,492 - Atu3339 0.70 -1.2
374,572 - Atu3339 0.78 -0.7
374,592 + Atu3339 0.81 -1.2
374,622 + Atu3339 0.84 -1.0
374,622 + Atu3339 0.84 -0.4
374,630 - Atu3339 0.84 -0.4
374,630 - Atu3339 0.84 -2.3

Or see this region's nucleotide sequence