Strain Fitness in Agrobacterium fabrum C58 around Atu0678

Experiment: D-(+)-Turanose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0676 and Atu0677 are separated by 4 nucleotidesAtu0677 and Atu0678 are separated by 16 nucleotidesAtu0678 and Atu0679 overlap by 4 nucleotidesAtu0679 and Atu0680 are separated by 64 nucleotides Atu0676: Atu0676 - histidyl-tRNA synthetase, at 670,894 to 672,417 Atu0676 Atu0677: Atu0677 - hypothetical protein, at 672,422 to 672,790 Atu0677 Atu0678: Atu0678 - histidyl-tRNA synthetase, at 672,807 to 673,934 Atu0678 Atu0679: Atu0679 - ATP phosphoribosyltransferase, at 673,931 to 674,623 Atu0679 Atu0680: Atu0680 - hypothetical protein, at 674,688 to 675,179 Atu0680 Position (kb) 672 673 674Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1at 672.381 kb on + strandat 672.518 kb on - strand, within Atu0677at 672.531 kb on - strand, within Atu0677at 672.698 kb on - strand, within Atu0677at 672.893 kb on + strandat 672.894 kb on - strandat 672.987 kb on - strand, within Atu0678at 673.348 kb on + strand, within Atu0678at 673.375 kb on - strand, within Atu0678at 673.417 kb on + strand, within Atu0678at 673.548 kb on + strand, within Atu0678at 673.574 kb on + strand, within Atu0678at 673.582 kb on - strand, within Atu0678at 673.593 kb on + strand, within Atu0678at 673.614 kb on - strand, within Atu0678at 673.697 kb on - strand, within Atu0678at 673.802 kb on - strand, within Atu0678at 673.901 kb on + strandat 673.929 kb on + strandat 673.993 kb on - strandat 674.162 kb on + strand, within Atu0679at 674.162 kb on + strand, within Atu0679at 674.170 kb on - strand, within Atu0679at 674.255 kb on + strand, within Atu0679at 674.286 kb on - strand, within Atu0679at 674.387 kb on - strand, within Atu0679at 674.407 kb on - strand, within Atu0679at 674.428 kb on + strand, within Atu0679at 674.473 kb on - strand, within Atu0679at 674.686 kb on + strandat 674.759 kb on + strand, within Atu0680at 674.767 kb on - strand, within Atu0680at 674.767 kb on - strand, within Atu0680at 674.831 kb on - strand, within Atu0680at 674.852 kb on + strand, within Atu0680

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Per-strain Table

Position Strand Gene LocusTag Fraction D-(+)-Turanose (C)
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672,381 + -0.4
672,518 - Atu0677 0.26 -0.9
672,531 - Atu0677 0.30 -0.3
672,698 - Atu0677 0.75 -0.4
672,893 + -1.1
672,894 - -3.5
672,987 - Atu0678 0.16 -6.9
673,348 + Atu0678 0.48 -4.2
673,375 - Atu0678 0.50 -4.3
673,417 + Atu0678 0.54 -2.1
673,548 + Atu0678 0.66 -1.4
673,574 + Atu0678 0.68 -2.4
673,582 - Atu0678 0.69 -3.4
673,593 + Atu0678 0.70 -1.4
673,614 - Atu0678 0.72 -3.7
673,697 - Atu0678 0.79 -2.9
673,802 - Atu0678 0.88 -3.0
673,901 + -2.3
673,929 + -1.1
673,993 - -2.0
674,162 + Atu0679 0.33 -4.1
674,162 + Atu0679 0.33 -4.8
674,170 - Atu0679 0.34 -1.6
674,255 + Atu0679 0.47 -3.0
674,286 - Atu0679 0.51 -5.2
674,387 - Atu0679 0.66 -2.1
674,407 - Atu0679 0.69 -4.0
674,428 + Atu0679 0.72 -6.2
674,473 - Atu0679 0.78 -2.0
674,686 + +0.0
674,759 + Atu0680 0.14 -0.6
674,767 - Atu0680 0.16 -1.7
674,767 - Atu0680 0.16 +0.4
674,831 - Atu0680 0.29 +1.6
674,852 + Atu0680 0.33 -0.0

Or see this region's nucleotide sequence