Strain Fitness in Agrobacterium fabrum C58 around Atu0537

Experiment: D-(+)-Turanose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAtu0535 and Atu0536 are separated by 2 nucleotidesAtu0536 and Atu0537 are separated by 3 nucleotidesAtu0537 and Atu0538 are separated by 133 nucleotidesAtu0538 and Atu0539 are separated by 113 nucleotides Atu0535: Atu0535 - hypothetical protein, at 526,902 to 527,390 Atu0535 Atu0536: Atu0536 - hypothetical protein, at 527,393 to 527,866 Atu0536 Atu0537: Atu0537 - histidinol dehydrogenase, at 527,870 to 529,168 Atu0537 Atu0538: Atu0538 - hypothetical protein, at 529,302 to 529,742 Atu0538 Atu0539: Atu0539 - UDP-N-acetylglucosamine, at 529,856 to 531,148 Atu0539 Position (kb) 527 528 529 530Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 527.068 kb on - strand, within Atu0535at 527.103 kb on + strand, within Atu0535at 527.153 kb on + strand, within Atu0535at 527.153 kb on + strand, within Atu0535at 527.161 kb on - strand, within Atu0535at 527.161 kb on - strand, within Atu0535at 527.161 kb on - strand, within Atu0535at 527.161 kb on - strand, within Atu0535at 527.260 kb on - strand, within Atu0535at 527.390 kb on + strandat 527.390 kb on + strandat 527.455 kb on + strand, within Atu0536at 527.550 kb on - strand, within Atu0536at 527.649 kb on + strand, within Atu0536at 527.657 kb on - strand, within Atu0536at 527.657 kb on - strand, within Atu0536at 527.678 kb on + strand, within Atu0536at 527.802 kb on + strand, within Atu0536at 527.802 kb on + strand, within Atu0536at 527.802 kb on + strand, within Atu0536at 527.810 kb on - strand, within Atu0536at 527.876 kb on - strandat 527.922 kb on - strandat 527.930 kb on - strandat 527.940 kb on - strandat 527.979 kb on - strandat 527.979 kb on - strandat 528.038 kb on - strand, within Atu0537at 528.105 kb on - strand, within Atu0537at 528.143 kb on - strand, within Atu0537at 528.348 kb on - strand, within Atu0537at 528.424 kb on - strand, within Atu0537at 528.489 kb on + strand, within Atu0537at 528.497 kb on - strand, within Atu0537at 528.525 kb on + strand, within Atu0537at 528.660 kb on + strand, within Atu0537at 528.683 kb on - strand, within Atu0537at 528.737 kb on + strand, within Atu0537at 528.737 kb on + strand, within Atu0537at 528.745 kb on - strand, within Atu0537at 528.828 kb on - strand, within Atu0537at 528.868 kb on + strand, within Atu0537at 529.035 kb on - strand, within Atu0537at 529.048 kb on - strandat 529.058 kb on - strandat 529.058 kb on - strandat 529.069 kb on + strandat 529.178 kb on - strandat 529.241 kb on + strandat 529.356 kb on - strand, within Atu0538at 529.378 kb on - strand, within Atu0538at 529.482 kb on + strand, within Atu0538at 529.662 kb on - strand, within Atu0538at 529.685 kb on + strand, within Atu0538at 529.777 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-(+)-Turanose (C)
remove
527,068 - Atu0535 0.34 +0.2
527,103 + Atu0535 0.41 -0.2
527,153 + Atu0535 0.51 +0.4
527,153 + Atu0535 0.51 +0.3
527,161 - Atu0535 0.53 -0.9
527,161 - Atu0535 0.53 -1.0
527,161 - Atu0535 0.53 -0.1
527,161 - Atu0535 0.53 +0.1
527,260 - Atu0535 0.73 -0.0
527,390 + +0.4
527,390 + -0.8
527,455 + Atu0536 0.13 -0.1
527,550 - Atu0536 0.33 +0.3
527,649 + Atu0536 0.54 +0.1
527,657 - Atu0536 0.56 -0.1
527,657 - Atu0536 0.56 -0.6
527,678 + Atu0536 0.60 +0.7
527,802 + Atu0536 0.86 +0.1
527,802 + Atu0536 0.86 -0.6
527,802 + Atu0536 0.86 +0.4
527,810 - Atu0536 0.88 +0.8
527,876 - -0.8
527,922 - -2.6
527,930 - -5.6
527,940 - -3.9
527,979 - -5.5
527,979 - -4.8
528,038 - Atu0537 0.13 -3.1
528,105 - Atu0537 0.18 -1.8
528,143 - Atu0537 0.21 -3.7
528,348 - Atu0537 0.37 -4.1
528,424 - Atu0537 0.43 -6.0
528,489 + Atu0537 0.48 -1.7
528,497 - Atu0537 0.48 -2.9
528,525 + Atu0537 0.50 -2.4
528,660 + Atu0537 0.61 -2.8
528,683 - Atu0537 0.63 -5.3
528,737 + Atu0537 0.67 -1.5
528,737 + Atu0537 0.67 -5.0
528,745 - Atu0537 0.67 -3.4
528,828 - Atu0537 0.74 -0.5
528,868 + Atu0537 0.77 -3.0
529,035 - Atu0537 0.90 -2.7
529,048 - -6.0
529,058 - -4.1
529,058 - -1.1
529,069 + -1.1
529,178 - -0.6
529,241 + -2.7
529,356 - Atu0538 0.12 +0.4
529,378 - Atu0538 0.17 +1.0
529,482 + Atu0538 0.41 +0.0
529,662 - Atu0538 0.82 -0.1
529,685 + Atu0538 0.87 -0.2
529,777 + -0.1

Or see this region's nucleotide sequence