Experiment: L-Lysine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_3729 and PP_3730 overlap by 4 nucleotides PP_3730 and PP_3731 are separated by 73 nucleotides PP_3731 and PP_3732 are separated by 116 nucleotides PP_3732 and PP_3733 are separated by 53 nucleotides
PP_3729: PP_3729 - Periplasmic amino acid-binding protein-related protein, at 4,256,124 to 4,256,906
_3729
PP_3730: PP_3730 - Transcriptional regulatory protein AruR, at 4,256,903 to 4,257,619
_3730
PP_3731: PP_3731 - Transcriptional regulator, TetR family, at 4,257,693 to 4,258,337
_3731
PP_3732: PP_3732 - Enoyl-CoA hydratase/isomerase family protein, at 4,258,454 to 4,259,200
_3732
PP_3733: PP_3733 - putative ABC transporter lipoprotein, at 4,259,254 to 4,260,312
_3733
Position (kb) 4257
4258
4259 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 4256.932 kb on - strand at 4256.932 kb on - strand at 4257.325 kb on - strand at 4257.366 kb on + strand, within PP_3730 at 4257.533 kb on + strand at 4257.534 kb on - strand, within PP_3730 at 4257.558 kb on + strand at 4257.559 kb on - strand at 4257.559 kb on - strand at 4257.651 kb on + strand at 4257.652 kb on - strand at 4257.652 kb on - strand at 4257.652 kb on - strand at 4257.652 kb on - strand at 4257.672 kb on + strand at 4257.673 kb on - strand at 4257.673 kb on - strand at 4257.906 kb on + strand, within PP_3731 at 4257.929 kb on - strand, within PP_3731 at 4257.938 kb on - strand, within PP_3731 at 4258.141 kb on + strand, within PP_3731 at 4258.141 kb on + strand, within PP_3731 at 4258.141 kb on + strand, within PP_3731 at 4258.141 kb on + strand, within PP_3731 at 4258.141 kb on + strand, within PP_3731 at 4258.141 kb on + strand, within PP_3731 at 4258.141 kb on + strand, within PP_3731 at 4258.141 kb on + strand, within PP_3731 at 4258.141 kb on + strand, within PP_3731 at 4258.141 kb on + strand, within PP_3731 at 4258.142 kb on - strand, within PP_3731 at 4258.142 kb on - strand, within PP_3731 at 4258.142 kb on - strand, within PP_3731 at 4258.142 kb on - strand, within PP_3731 at 4258.142 kb on - strand, within PP_3731 at 4258.142 kb on - strand, within PP_3731 at 4258.142 kb on - strand, within PP_3731 at 4258.142 kb on - strand, within PP_3731 at 4258.174 kb on + strand, within PP_3731 at 4258.318 kb on + strand at 4258.375 kb on + strand at 4258.398 kb on - strand at 4258.404 kb on + strand at 4258.405 kb on - strand at 4258.405 kb on - strand at 4258.547 kb on + strand, within PP_3732 at 4258.547 kb on + strand, within PP_3732 at 4258.547 kb on + strand, within PP_3732 at 4258.548 kb on - strand, within PP_3732 at 4258.548 kb on - strand, within PP_3732 at 4258.548 kb on - strand, within PP_3732 at 4258.548 kb on - strand, within PP_3732 at 4258.548 kb on - strand, within PP_3732 at 4259.065 kb on + strand, within PP_3732 at 4259.219 kb on + strand at 4259.219 kb on + strand at 4259.219 kb on + strand at 4259.255 kb on + strand at 4259.255 kb on + strand at 4259.255 kb on + strand at 4259.255 kb on + strand at 4259.256 kb on - strand at 4259.258 kb on + strand at 4259.277 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lysine (C) remove 4,256,932 - +0.1 4,256,932 - -0.2 4,257,325 - -1.0 4,257,366 + PP_3730 0.65 -1.9 4,257,533 + -0.0 4,257,534 - PP_3730 0.88 -2.6 4,257,558 + -1.8 4,257,559 - -1.0 4,257,559 - -2.0 4,257,651 + -3.4 4,257,652 - +3.7 4,257,652 - +3.1 4,257,652 - +3.6 4,257,652 - +3.0 4,257,672 + -4.3 4,257,673 - +2.8 4,257,673 - +2.6 4,257,906 + PP_3731 0.33 +2.4 4,257,929 - PP_3731 0.37 +2.5 4,257,938 - PP_3731 0.38 +2.9 4,258,141 + PP_3731 0.69 +2.1 4,258,141 + PP_3731 0.69 +2.6 4,258,141 + PP_3731 0.69 +1.8 4,258,141 + PP_3731 0.69 +2.6 4,258,141 + PP_3731 0.69 +1.8 4,258,141 + PP_3731 0.69 +2.5 4,258,141 + PP_3731 0.69 +1.9 4,258,141 + PP_3731 0.69 +2.4 4,258,141 + PP_3731 0.69 +2.3 4,258,141 + PP_3731 0.69 +0.9 4,258,142 - PP_3731 0.70 +2.9 4,258,142 - PP_3731 0.70 +2.6 4,258,142 - PP_3731 0.70 +2.3 4,258,142 - PP_3731 0.70 +1.7 4,258,142 - PP_3731 0.70 +2.0 4,258,142 - PP_3731 0.70 +2.5 4,258,142 - PP_3731 0.70 +2.6 4,258,142 - PP_3731 0.70 +1.6 4,258,174 + PP_3731 0.75 +1.0 4,258,318 + +2.5 4,258,375 + +2.4 4,258,398 - +2.3 4,258,404 + -0.2 4,258,405 - +2.0 4,258,405 - +2.4 4,258,547 + PP_3732 0.12 -0.1 4,258,547 + PP_3732 0.12 +0.3 4,258,547 + PP_3732 0.12 +0.8 4,258,548 - PP_3732 0.13 +1.9 4,258,548 - PP_3732 0.13 +1.8 4,258,548 - PP_3732 0.13 +1.9 4,258,548 - PP_3732 0.13 +1.8 4,258,548 - PP_3732 0.13 +3.1 4,259,065 + PP_3732 0.82 -1.3 4,259,219 + -0.1 4,259,219 + +0.4 4,259,219 + +0.5 4,259,255 + +0.7 4,259,255 + +1.5 4,259,255 + -0.2 4,259,255 + -0.2 4,259,256 - +0.4 4,259,258 + +0.4 4,259,277 - -1.2
Or see this region's nucleotide sequence