Experiment: L-Lysine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0280 and PP_0281 overlap by 1 nucleotides PP_0281 and PP_0282 are separated by 54 nucleotides PP_0282 and PP_0283 are separated by 11 nucleotides PP_0283 and PP_5438 are separated by 77 nucleotides
PP_0280: PP_0280 - Amino acid ABC transporter, permease protein, at 337,879 to 338,568
_0280
PP_0281: PP_0281 - Amino acid ABC transporter, permease protein, at 338,568 to 339,260
_0281
PP_0282: PP_0282 - L-arginine ABC transporter - periplasmic binding subunit, at 339,315 to 340,067
_0282
PP_0283: PP_0283 - Arginine/ornithine transport ATP-binding protein AotP, at 340,079 to 340,852
_0283
PP_5438: PP_5438 - conserved protein of unknown function, at 340,930 to 341,106
_5438
Position (kb) 339
340
341 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 338.351 kb on + strand, within PP_0280 at 338.402 kb on + strand, within PP_0280 at 338.402 kb on + strand, within PP_0280 at 338.426 kb on + strand, within PP_0280 at 338.569 kb on + strand at 338.570 kb on - strand at 338.570 kb on - strand at 338.570 kb on - strand at 338.619 kb on - strand at 338.650 kb on + strand, within PP_0281 at 338.651 kb on - strand, within PP_0281 at 338.651 kb on - strand, within PP_0281 at 338.651 kb on - strand, within PP_0281 at 338.651 kb on - strand, within PP_0281 at 338.671 kb on + strand, within PP_0281 at 338.671 kb on + strand, within PP_0281 at 338.672 kb on - strand, within PP_0281 at 338.672 kb on - strand, within PP_0281 at 338.672 kb on - strand, within PP_0281 at 338.906 kb on + strand, within PP_0281 at 339.046 kb on + strand, within PP_0281 at 339.046 kb on + strand, within PP_0281 at 339.047 kb on - strand, within PP_0281 at 339.047 kb on - strand, within PP_0281 at 339.047 kb on - strand, within PP_0281 at 339.050 kb on + strand, within PP_0281 at 339.050 kb on + strand, within PP_0281 at 339.050 kb on + strand, within PP_0281 at 339.051 kb on - strand, within PP_0281 at 339.051 kb on - strand, within PP_0281 at 339.051 kb on - strand, within PP_0281 at 339.051 kb on - strand, within PP_0281 at 339.051 kb on - strand, within PP_0281 at 339.051 kb on - strand, within PP_0281 at 339.051 kb on - strand, within PP_0281 at 339.058 kb on - strand, within PP_0281 at 339.058 kb on - strand, within PP_0281 at 339.097 kb on + strand, within PP_0281 at 339.255 kb on - strand at 339.337 kb on + strand at 339.337 kb on + strand at 339.337 kb on + strand at 339.337 kb on + strand at 339.338 kb on - strand at 339.338 kb on - strand at 339.358 kb on + strand at 339.358 kb on + strand at 339.358 kb on + strand at 339.358 kb on + strand at 339.359 kb on - strand at 339.362 kb on + strand at 339.363 kb on - strand at 339.514 kb on + strand, within PP_0282 at 339.514 kb on + strand, within PP_0282 at 339.515 kb on - strand, within PP_0282 at 339.523 kb on + strand, within PP_0282 at 339.523 kb on + strand, within PP_0282 at 339.523 kb on + strand, within PP_0282 at 339.524 kb on - strand, within PP_0282 at 339.524 kb on - strand, within PP_0282 at 339.524 kb on - strand, within PP_0282 at 339.524 kb on - strand, within PP_0282 at 339.524 kb on - strand, within PP_0282 at 339.548 kb on + strand, within PP_0282 at 339.571 kb on + strand, within PP_0282 at 339.593 kb on - strand, within PP_0282 at 339.631 kb on + strand, within PP_0282 at 339.631 kb on + strand, within PP_0282 at 339.631 kb on + strand, within PP_0282 at 339.631 kb on + strand, within PP_0282 at 339.631 kb on + strand, within PP_0282 at 339.632 kb on - strand, within PP_0282 at 339.671 kb on + strand, within PP_0282 at 339.671 kb on + strand, within PP_0282 at 339.672 kb on - strand, within PP_0282 at 339.742 kb on + strand, within PP_0282 at 339.742 kb on + strand, within PP_0282 at 339.743 kb on - strand, within PP_0282 at 339.743 kb on - strand, within PP_0282 at 339.745 kb on + strand, within PP_0282 at 339.745 kb on + strand, within PP_0282 at 339.745 kb on + strand, within PP_0282 at 339.746 kb on - strand, within PP_0282 at 339.860 kb on + strand, within PP_0282 at 340.057 kb on + strand at 340.058 kb on - strand at 340.069 kb on + strand at 340.069 kb on + strand at 340.069 kb on + strand at 340.069 kb on + strand at 340.070 kb on - strand at 340.070 kb on - strand at 340.070 kb on - strand at 340.070 kb on - strand at 340.070 kb on - strand at 340.070 kb on - strand at 340.070 kb on - strand at 340.240 kb on + strand, within PP_0283 at 340.267 kb on + strand, within PP_0283 at 340.273 kb on + strand, within PP_0283 at 340.274 kb on - strand, within PP_0283 at 340.405 kb on - strand, within PP_0283 at 340.405 kb on - strand, within PP_0283 at 340.422 kb on + strand, within PP_0283 at 340.717 kb on + strand, within PP_0283 at 340.717 kb on + strand, within PP_0283 at 340.718 kb on - strand, within PP_0283 at 340.785 kb on - strand at 340.803 kb on + strand at 340.917 kb on + strand at 340.917 kb on + strand at 340.917 kb on + strand at 340.918 kb on - strand at 340.918 kb on - strand at 340.923 kb on - strand at 340.923 kb on - strand at 340.931 kb on + strand at 340.932 kb on - strand at 340.999 kb on + strand, within PP_5438
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lysine (C) remove 338,351 + PP_0280 0.68 +1.5 338,402 + PP_0280 0.76 +0.5 338,402 + PP_0280 0.76 -0.2 338,426 + PP_0280 0.79 +0.2 338,569 + +0.4 338,570 - -1.0 338,570 - +1.0 338,570 - -0.0 338,619 - +1.6 338,650 + PP_0281 0.12 +0.4 338,651 - PP_0281 0.12 -0.4 338,651 - PP_0281 0.12 +1.1 338,651 - PP_0281 0.12 -1.0 338,651 - PP_0281 0.12 +1.8 338,671 + PP_0281 0.15 -2.2 338,671 + PP_0281 0.15 +0.8 338,672 - PP_0281 0.15 +0.5 338,672 - PP_0281 0.15 +1.7 338,672 - PP_0281 0.15 +0.6 338,906 + PP_0281 0.49 +0.2 339,046 + PP_0281 0.69 +1.8 339,046 + PP_0281 0.69 +1.5 339,047 - PP_0281 0.69 -1.2 339,047 - PP_0281 0.69 -0.1 339,047 - PP_0281 0.69 +0.0 339,050 + PP_0281 0.70 +0.7 339,050 + PP_0281 0.70 +2.1 339,050 + PP_0281 0.70 -0.3 339,051 - PP_0281 0.70 -0.7 339,051 - PP_0281 0.70 -2.6 339,051 - PP_0281 0.70 +0.9 339,051 - PP_0281 0.70 +1.3 339,051 - PP_0281 0.70 +1.8 339,051 - PP_0281 0.70 +1.4 339,051 - PP_0281 0.70 +2.0 339,058 - PP_0281 0.71 +1.3 339,058 - PP_0281 0.71 +0.0 339,097 + PP_0281 0.76 +0.2 339,255 - +0.9 339,337 + +0.8 339,337 + +0.9 339,337 + +0.3 339,337 + +1.6 339,338 - +1.3 339,338 - +0.7 339,358 + +1.0 339,358 + +0.2 339,358 + +0.3 339,358 + +0.6 339,359 - +1.0 339,362 + +3.9 339,363 - +2.0 339,514 + PP_0282 0.26 +2.9 339,514 + PP_0282 0.26 -1.4 339,515 - PP_0282 0.27 +1.6 339,523 + PP_0282 0.28 +1.7 339,523 + PP_0282 0.28 +1.4 339,523 + PP_0282 0.28 +1.2 339,524 - PP_0282 0.28 +0.2 339,524 - PP_0282 0.28 -2.8 339,524 - PP_0282 0.28 -0.3 339,524 - PP_0282 0.28 -1.4 339,524 - PP_0282 0.28 +0.5 339,548 + PP_0282 0.31 +1.4 339,571 + PP_0282 0.34 +0.9 339,593 - PP_0282 0.37 -0.1 339,631 + PP_0282 0.42 +1.0 339,631 + PP_0282 0.42 +4.0 339,631 + PP_0282 0.42 +0.7 339,631 + PP_0282 0.42 +2.3 339,631 + PP_0282 0.42 +0.7 339,632 - PP_0282 0.42 +0.9 339,671 + PP_0282 0.47 +0.9 339,671 + PP_0282 0.47 +0.8 339,672 - PP_0282 0.47 -0.4 339,742 + PP_0282 0.57 +1.4 339,742 + PP_0282 0.57 +1.5 339,743 - PP_0282 0.57 +1.0 339,743 - PP_0282 0.57 +0.7 339,745 + PP_0282 0.57 +0.9 339,745 + PP_0282 0.57 +2.0 339,745 + PP_0282 0.57 +0.4 339,746 - PP_0282 0.57 -1.4 339,860 + PP_0282 0.72 +1.6 340,057 + +0.4 340,058 - +1.3 340,069 + +2.0 340,069 + -0.2 340,069 + +3.5 340,069 + +1.7 340,070 - +1.8 340,070 - +1.1 340,070 - +2.4 340,070 - +0.5 340,070 - +1.1 340,070 - +0.8 340,070 - +0.4 340,240 + PP_0283 0.21 +2.2 340,267 + PP_0283 0.24 -0.8 340,273 + PP_0283 0.25 +1.0 340,274 - PP_0283 0.25 -1.3 340,405 - PP_0283 0.42 +1.3 340,405 - PP_0283 0.42 +0.1 340,422 + PP_0283 0.44 +1.8 340,717 + PP_0283 0.82 +1.8 340,717 + PP_0283 0.82 -0.0 340,718 - PP_0283 0.83 -0.9 340,785 - +1.5 340,803 + -1.1 340,917 + -1.5 340,917 + +1.4 340,917 + -0.0 340,918 - +1.4 340,918 - +0.3 340,923 - +0.0 340,923 - +1.6 340,931 + +1.2 340,932 - -0.2 340,999 + PP_5438 0.39 +1.0
Or see this region's nucleotide sequence