Strain Fitness in Pseudomonas putida KT2440 around PP_4947

Experiment: L-Leucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_4946 and PP_4947 are separated by 205 nucleotidesPP_4947 and PP_5718 are separated by 382 nucleotides PP_4946: PP_4946 - sodium/L-proline transporter, at 5,628,637 to 5,630,265 _4946 PP_4947: PP_4947 - proline dehydrogenase/1-pyrroline-5-carboxylate dehydrogenase, at 5,630,471 to 5,634,424 _4947 PP_5718: PP_5718 - conserved membrane protein of unknown function, at 5,634,807 to 5,635,490 _5718 Position (kb) 5630 5631 5632 5633 5634 5635Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 5629.555 kb on + strand, within PP_4946at 5629.556 kb on - strand, within PP_4946at 5629.556 kb on - strand, within PP_4946at 5629.601 kb on + strand, within PP_4946at 5629.643 kb on + strand, within PP_4946at 5629.703 kb on + strand, within PP_4946at 5629.703 kb on + strand, within PP_4946at 5629.703 kb on + strandat 5629.703 kb on + strand, within PP_4946at 5629.703 kb on + strand, within PP_4946at 5629.703 kb on + strand, within PP_4946at 5629.704 kb on - strand, within PP_4946at 5629.704 kb on - strand, within PP_4946at 5629.743 kb on + strand, within PP_4946at 5629.744 kb on - strand, within PP_4946at 5629.784 kb on + strand, within PP_4946at 5629.784 kb on + strand, within PP_4946at 5629.916 kb on + strand, within PP_4946at 5629.916 kb on + strand, within PP_4946at 5629.916 kb on + strand, within PP_4946at 5629.917 kb on - strand, within PP_4946at 5630.081 kb on + strand, within PP_4946at 5630.081 kb on + strand, within PP_4946at 5630.139 kb on + strandat 5630.188 kb on - strandat 5630.188 kb on - strandat 5630.345 kb on + strandat 5630.346 kb on - strandat 5630.414 kb on + strandat 5630.420 kb on + strandat 5630.420 kb on + strandat 5630.420 kb on + strandat 5630.437 kb on + strandat 5630.456 kb on + strandat 5630.466 kb on - strandat 5630.588 kb on + strandat 5630.588 kb on + strandat 5630.734 kb on - strandat 5631.308 kb on + strand, within PP_4947at 5631.314 kb on + strand, within PP_4947at 5631.362 kb on + strand, within PP_4947at 5631.363 kb on - strand, within PP_4947at 5631.375 kb on - strand, within PP_4947at 5631.375 kb on - strand, within PP_4947at 5631.375 kb on - strand, within PP_4947at 5631.425 kb on + strand, within PP_4947at 5631.425 kb on + strand, within PP_4947at 5631.425 kb on + strand, within PP_4947at 5631.425 kb on + strand, within PP_4947at 5631.425 kb on + strand, within PP_4947at 5631.425 kb on + strand, within PP_4947at 5631.426 kb on - strand, within PP_4947at 5631.426 kb on - strand, within PP_4947at 5631.426 kb on - strand, within PP_4947at 5631.426 kb on - strand, within PP_4947at 5631.426 kb on - strand, within PP_4947at 5631.552 kb on - strand, within PP_4947at 5631.566 kb on - strand, within PP_4947at 5631.680 kb on + strand, within PP_4947at 5631.698 kb on + strand, within PP_4947at 5631.710 kb on + strand, within PP_4947at 5631.711 kb on - strand, within PP_4947at 5631.845 kb on + strand, within PP_4947at 5631.846 kb on - strand, within PP_4947at 5631.846 kb on - strand, within PP_4947at 5631.860 kb on + strand, within PP_4947at 5631.860 kb on + strand, within PP_4947at 5631.906 kb on - strand, within PP_4947at 5631.906 kb on - strand, within PP_4947at 5631.950 kb on + strand, within PP_4947at 5631.951 kb on - strand, within PP_4947at 5631.951 kb on - strand, within PP_4947at 5631.971 kb on + strand, within PP_4947at 5631.971 kb on + strand, within PP_4947at 5631.971 kb on + strand, within PP_4947at 5631.971 kb on + strand, within PP_4947at 5631.971 kb on + strand, within PP_4947at 5631.971 kb on + strand, within PP_4947at 5631.972 kb on - strand, within PP_4947at 5631.987 kb on - strand, within PP_4947at 5632.025 kb on + strand, within PP_4947at 5632.082 kb on + strand, within PP_4947at 5632.082 kb on + strand, within PP_4947at 5632.083 kb on - strand, within PP_4947at 5632.083 kb on - strand, within PP_4947at 5632.083 kb on - strand, within PP_4947at 5632.083 kb on - strand, within PP_4947at 5632.118 kb on + strand, within PP_4947at 5632.298 kb on + strand, within PP_4947at 5632.299 kb on - strand, within PP_4947at 5632.738 kb on + strand, within PP_4947at 5632.739 kb on - strand, within PP_4947at 5633.262 kb on + strand, within PP_4947at 5633.411 kb on + strand, within PP_4947at 5633.412 kb on - strand, within PP_4947at 5633.541 kb on - strand, within PP_4947at 5633.541 kb on - strand, within PP_4947at 5633.672 kb on + strand, within PP_4947at 5633.672 kb on + strand, within PP_4947at 5633.672 kb on + strand, within PP_4947at 5633.672 kb on + strand, within PP_4947at 5633.672 kb on + strand, within PP_4947at 5633.672 kb on + strand, within PP_4947at 5633.673 kb on - strand, within PP_4947at 5633.673 kb on - strand, within PP_4947at 5633.673 kb on - strand, within PP_4947at 5633.768 kb on + strand, within PP_4947at 5633.769 kb on - strand, within PP_4947at 5633.775 kb on - strand, within PP_4947at 5633.874 kb on + strand, within PP_4947at 5633.875 kb on - strand, within PP_4947at 5634.014 kb on + strand, within PP_4947at 5634.014 kb on + strand, within PP_4947at 5634.014 kb on + strand, within PP_4947at 5634.015 kb on - strand, within PP_4947at 5634.015 kb on - strand, within PP_4947at 5634.015 kb on - strand, within PP_4947at 5634.264 kb on + strandat 5634.397 kb on + strandat 5634.504 kb on + strandat 5634.562 kb on + strandat 5634.563 kb on - strandat 5634.570 kb on - strandat 5634.626 kb on + strandat 5634.627 kb on - strandat 5634.628 kb on + strandat 5634.628 kb on + strandat 5634.628 kb on + strandat 5634.628 kb on + strandat 5634.628 kb on + strandat 5634.628 kb on + strandat 5634.628 kb on + strandat 5634.629 kb on - strandat 5634.629 kb on - strandat 5634.629 kb on - strandat 5634.629 kb on - strandat 5634.629 kb on - strandat 5634.629 kb on - strandat 5634.629 kb on - strandat 5634.629 kb on - strandat 5634.651 kb on - strandat 5634.728 kb on + strandat 5634.728 kb on + strandat 5634.729 kb on - strandat 5634.732 kb on - strandat 5634.863 kb on + strandat 5635.007 kb on - strand, within PP_5718at 5635.007 kb on - strand, within PP_5718at 5635.069 kb on + strand, within PP_5718at 5635.070 kb on - strand, within PP_5718at 5635.070 kb on - strand, within PP_5718at 5635.072 kb on + strand, within PP_5718at 5635.105 kb on + strand, within PP_5718at 5635.106 kb on - strand, within PP_5718at 5635.106 kb on - strand, within PP_5718at 5635.113 kb on - strand, within PP_5718at 5635.128 kb on - strand, within PP_5718at 5635.156 kb on + strand, within PP_5718at 5635.157 kb on - strand, within PP_5718at 5635.157 kb on - strandat 5635.197 kb on + strand, within PP_5718at 5635.220 kb on + strand, within PP_5718at 5635.221 kb on - strand, within PP_5718at 5635.221 kb on - strand, within PP_5718at 5635.241 kb on - strand, within PP_5718at 5635.271 kb on + strand, within PP_5718at 5635.272 kb on - strand, within PP_5718at 5635.284 kb on + strand, within PP_5718at 5635.285 kb on - strand, within PP_5718at 5635.308 kb on + strand, within PP_5718at 5635.309 kb on - strand, within PP_5718

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
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5,629,555 + PP_4946 0.56 -1.1
5,629,556 - PP_4946 0.56 +0.5
5,629,556 - PP_4946 0.56 +0.2
5,629,601 + PP_4946 0.59 -0.1
5,629,643 + PP_4946 0.62 +1.0
5,629,703 + PP_4946 0.65 -1.7
5,629,703 + PP_4946 0.65 -2.4
5,629,703 + +1.5
5,629,703 + PP_4946 0.65 +0.0
5,629,703 + PP_4946 0.65 +1.0
5,629,703 + PP_4946 0.65 +0.7
5,629,704 - PP_4946 0.66 +1.5
5,629,704 - PP_4946 0.66 -0.1
5,629,743 + PP_4946 0.68 -0.9
5,629,744 - PP_4946 0.68 +1.9
5,629,784 + PP_4946 0.70 -2.4
5,629,784 + PP_4946 0.70 +1.1
5,629,916 + PP_4946 0.79 +0.1
5,629,916 + PP_4946 0.79 -1.8
5,629,916 + PP_4946 0.79 -1.5
5,629,917 - PP_4946 0.79 -0.9
5,630,081 + PP_4946 0.89 +0.2
5,630,081 + PP_4946 0.89 -0.6
5,630,139 + +1.2
5,630,188 - +0.0
5,630,188 - -0.9
5,630,345 + -0.1
5,630,346 - +0.6
5,630,414 + +0.1
5,630,420 + -0.5
5,630,420 + -1.2
5,630,420 + +0.9
5,630,437 + +0.0
5,630,456 + -0.7
5,630,466 - +3.1
5,630,588 + +2.0
5,630,588 + +2.7
5,630,734 - +2.6
5,631,308 + PP_4947 0.21 +2.6
5,631,314 + PP_4947 0.21 +2.4
5,631,362 + PP_4947 0.23 +3.2
5,631,363 - PP_4947 0.23 +3.5
5,631,375 - PP_4947 0.23 +2.8
5,631,375 - PP_4947 0.23 +2.9
5,631,375 - PP_4947 0.23 +2.7
5,631,425 + PP_4947 0.24 +2.8
5,631,425 + PP_4947 0.24 +4.0
5,631,425 + PP_4947 0.24 +3.6
5,631,425 + PP_4947 0.24 +3.2
5,631,425 + PP_4947 0.24 +2.9
5,631,425 + PP_4947 0.24 +3.5
5,631,426 - PP_4947 0.24 +2.6
5,631,426 - PP_4947 0.24 +2.9
5,631,426 - PP_4947 0.24 +3.4
5,631,426 - PP_4947 0.24 +2.9
5,631,426 - PP_4947 0.24 +4.0
5,631,552 - PP_4947 0.27 +3.9
5,631,566 - PP_4947 0.28 +3.8
5,631,680 + PP_4947 0.31 +3.0
5,631,698 + PP_4947 0.31 +2.3
5,631,710 + PP_4947 0.31 +2.9
5,631,711 - PP_4947 0.31 +2.8
5,631,845 + PP_4947 0.35 +2.9
5,631,846 - PP_4947 0.35 +2.8
5,631,846 - PP_4947 0.35 +2.4
5,631,860 + PP_4947 0.35 +3.1
5,631,860 + PP_4947 0.35 +2.9
5,631,906 - PP_4947 0.36 +1.7
5,631,906 - PP_4947 0.36 +1.6
5,631,950 + PP_4947 0.37 +2.1
5,631,951 - PP_4947 0.37 +2.8
5,631,951 - PP_4947 0.37 +3.3
5,631,971 + PP_4947 0.38 +2.5
5,631,971 + PP_4947 0.38 +3.1
5,631,971 + PP_4947 0.38 +2.6
5,631,971 + PP_4947 0.38 +2.8
5,631,971 + PP_4947 0.38 +2.9
5,631,971 + PP_4947 0.38 +3.2
5,631,972 - PP_4947 0.38 +2.4
5,631,987 - PP_4947 0.38 +2.2
5,632,025 + PP_4947 0.39 +3.0
5,632,082 + PP_4947 0.41 +2.6
5,632,082 + PP_4947 0.41 +2.4
5,632,083 - PP_4947 0.41 +3.7
5,632,083 - PP_4947 0.41 +2.6
5,632,083 - PP_4947 0.41 +2.7
5,632,083 - PP_4947 0.41 +2.4
5,632,118 + PP_4947 0.42 +3.4
5,632,298 + PP_4947 0.46 +2.3
5,632,299 - PP_4947 0.46 +2.8
5,632,738 + PP_4947 0.57 +2.7
5,632,739 - PP_4947 0.57 +2.9
5,633,262 + PP_4947 0.71 +3.1
5,633,411 + PP_4947 0.74 +2.5
5,633,412 - PP_4947 0.74 +0.6
5,633,541 - PP_4947 0.78 +2.8
5,633,541 - PP_4947 0.78 +2.8
5,633,672 + PP_4947 0.81 +2.3
5,633,672 + PP_4947 0.81 +1.5
5,633,672 + PP_4947 0.81 +2.8
5,633,672 + PP_4947 0.81 +2.3
5,633,672 + PP_4947 0.81 +3.7
5,633,672 + PP_4947 0.81 +2.1
5,633,673 - PP_4947 0.81 +3.0
5,633,673 - PP_4947 0.81 +0.9
5,633,673 - PP_4947 0.81 +2.0
5,633,768 + PP_4947 0.83 +3.2
5,633,769 - PP_4947 0.83 +2.1
5,633,775 - PP_4947 0.84 +2.9
5,633,874 + PP_4947 0.86 +2.2
5,633,875 - PP_4947 0.86 +3.0
5,634,014 + PP_4947 0.90 +1.9
5,634,014 + PP_4947 0.90 +2.6
5,634,014 + PP_4947 0.90 +2.5
5,634,015 - PP_4947 0.90 +0.9
5,634,015 - PP_4947 0.90 +1.5
5,634,015 - PP_4947 0.90 +2.9
5,634,264 + +2.4
5,634,397 + +2.5
5,634,504 + +0.6
5,634,562 + +0.7
5,634,563 - +1.3
5,634,570 - -0.6
5,634,626 + +0.8
5,634,627 - +0.7
5,634,628 + +1.2
5,634,628 + +1.1
5,634,628 + +0.9
5,634,628 + +0.6
5,634,628 + +2.4
5,634,628 + +1.1
5,634,628 + -1.1
5,634,629 - +0.9
5,634,629 - +0.1
5,634,629 - +0.5
5,634,629 - +2.1
5,634,629 - +0.2
5,634,629 - -1.1
5,634,629 - +0.0
5,634,629 - -1.1
5,634,651 - -1.5
5,634,728 + -0.6
5,634,728 + -0.3
5,634,729 - +1.5
5,634,732 - -0.9
5,634,863 + -0.1
5,635,007 - PP_5718 0.29 +0.6
5,635,007 - PP_5718 0.29 -1.1
5,635,069 + PP_5718 0.38 +0.4
5,635,070 - PP_5718 0.38 -0.5
5,635,070 - PP_5718 0.38 +0.9
5,635,072 + PP_5718 0.39 +1.2
5,635,105 + PP_5718 0.44 +1.3
5,635,106 - PP_5718 0.44 -0.6
5,635,106 - PP_5718 0.44 -0.1
5,635,113 - PP_5718 0.45 -1.0
5,635,128 - PP_5718 0.47 -1.7
5,635,156 + PP_5718 0.51 +0.4
5,635,157 - PP_5718 0.51 +2.3
5,635,157 - +0.5
5,635,197 + PP_5718 0.57 -1.1
5,635,220 + PP_5718 0.60 -0.9
5,635,221 - PP_5718 0.61 -0.1
5,635,221 - PP_5718 0.61 +0.8
5,635,241 - PP_5718 0.63 -0.9
5,635,271 + PP_5718 0.68 +1.6
5,635,272 - PP_5718 0.68 -0.3
5,635,284 + PP_5718 0.70 -1.2
5,635,285 - PP_5718 0.70 -0.4
5,635,308 + PP_5718 0.73 -0.4
5,635,309 - PP_5718 0.73 +1.6

Or see this region's nucleotide sequence