Strain Fitness in Agrobacterium fabrum C58 around Atu5061

Experiment: Maltitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu5059 and Atu5060 overlap by 11 nucleotidesAtu5060 and Atu5061 are separated by 16 nucleotidesAtu5061 and Atu5062 overlap by 4 nucleotides Atu5059: Atu5059 - ABC transporter membrane spanning protein (glycerol-3-phosphate), at 58,269 to 59,138 Atu5059 Atu5060: Atu5060 - ABC transporter membrane spanning protein (glycerol-3-phosphate), at 59,128 to 59,937 Atu5060 Atu5061: Atu5061 - glycerophosphoryl diester phosphodiesterase, at 59,954 to 60,703 Atu5061 Atu5062: Atu5062 - ABC transporter nucleotide binding/ATPase (glycerol-3-phosphate), at 60,700 to 61,743 Atu5062 Position (kb) 59 60 61Strain fitness (log2 ratio) -2 -1 0 1 2at 59.011 kb on - strand, within Atu5059at 59.044 kb on + strand, within Atu5059at 59.044 kb on + strand, within Atu5059at 59.179 kb on + strandat 59.196 kb on + strandat 59.196 kb on + strandat 59.199 kb on - strandat 59.204 kb on - strandat 59.235 kb on + strand, within Atu5060at 59.248 kb on - strand, within Atu5060at 59.268 kb on - strand, within Atu5060at 59.282 kb on + strand, within Atu5060at 59.300 kb on - strand, within Atu5060at 59.311 kb on + strand, within Atu5060at 59.319 kb on - strand, within Atu5060at 59.319 kb on - strand, within Atu5060at 59.336 kb on - strand, within Atu5060at 59.354 kb on + strand, within Atu5060at 59.360 kb on - strand, within Atu5060at 59.361 kb on - strand, within Atu5060at 59.362 kb on - strand, within Atu5060at 59.385 kb on - strand, within Atu5060at 59.385 kb on - strand, within Atu5060at 59.402 kb on - strand, within Atu5060at 59.415 kb on + strand, within Atu5060at 59.457 kb on - strand, within Atu5060at 59.490 kb on + strand, within Atu5060at 59.521 kb on - strand, within Atu5060at 59.534 kb on - strand, within Atu5060at 59.534 kb on - strand, within Atu5060at 59.566 kb on - strand, within Atu5060at 59.596 kb on - strand, within Atu5060at 59.649 kb on - strand, within Atu5060at 59.760 kb on + strand, within Atu5060at 59.766 kb on - strand, within Atu5060at 59.818 kb on - strand, within Atu5060at 59.843 kb on - strand, within Atu5060at 59.879 kb on + strandat 59.883 kb on + strandat 59.912 kb on + strandat 59.914 kb on + strandat 59.974 kb on - strandat 60.132 kb on - strand, within Atu5061at 60.133 kb on - strand, within Atu5061at 60.133 kb on - strand, within Atu5061at 60.399 kb on - strand, within Atu5061at 60.427 kb on + strand, within Atu5061at 60.541 kb on - strand, within Atu5061at 60.560 kb on + strand, within Atu5061at 60.584 kb on + strand, within Atu5061at 60.592 kb on - strand, within Atu5061at 60.746 kb on + strandat 60.746 kb on + strandat 60.746 kb on + strandat 60.754 kb on - strandat 60.756 kb on + strandat 60.756 kb on + strandat 60.756 kb on + strandat 60.853 kb on + strand, within Atu5062at 60.854 kb on + strand, within Atu5062at 60.878 kb on - strand, within Atu5062at 60.889 kb on + strand, within Atu5062at 60.897 kb on - strand, within Atu5062at 60.960 kb on + strand, within Atu5062at 61.068 kb on + strand, within Atu5062at 61.104 kb on + strand, within Atu5062at 61.111 kb on + strand, within Atu5062at 61.116 kb on + strand, within Atu5062at 61.124 kb on - strand, within Atu5062at 61.156 kb on + strand, within Atu5062at 61.164 kb on - strand, within Atu5062at 61.164 kb on - strand, within Atu5062at 61.221 kb on - strand, within Atu5062at 61.226 kb on + strand, within Atu5062at 61.258 kb on + strand, within Atu5062at 61.266 kb on - strand, within Atu5062at 61.266 kb on - strand, within Atu5062at 61.266 kb on - strand, within Atu5062at 61.266 kb on - strand, within Atu5062at 61.271 kb on - strand, within Atu5062at 61.304 kb on - strand, within Atu5062at 61.318 kb on + strand, within Atu5062at 61.441 kb on + strand, within Atu5062at 61.456 kb on + strand, within Atu5062at 61.459 kb on - strand, within Atu5062at 61.474 kb on - strand, within Atu5062at 61.485 kb on - strand, within Atu5062at 61.523 kb on + strand, within Atu5062at 61.523 kb on + strand, within Atu5062at 61.531 kb on - strand, within Atu5062at 61.565 kb on + strand, within Atu5062at 61.565 kb on + strand, within Atu5062at 61.573 kb on - strand, within Atu5062at 61.573 kb on - strand, within Atu5062at 61.573 kb on - strand, within Atu5062

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Per-strain Table

Position Strand Gene LocusTag Fraction Maltitol (C)
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59,011 - Atu5059 0.85 -0.3
59,044 + Atu5059 0.89 -0.6
59,044 + Atu5059 0.89 +1.2
59,179 + +0.3
59,196 + +0.3
59,196 + +1.7
59,199 - +0.3
59,204 - +0.1
59,235 + Atu5060 0.13 +0.2
59,248 - Atu5060 0.15 -0.1
59,268 - Atu5060 0.17 -1.5
59,282 + Atu5060 0.19 +0.1
59,300 - Atu5060 0.21 +0.1
59,311 + Atu5060 0.23 -0.7
59,319 - Atu5060 0.24 +0.0
59,319 - Atu5060 0.24 -0.6
59,336 - Atu5060 0.26 -0.1
59,354 + Atu5060 0.28 -0.1
59,360 - Atu5060 0.29 -0.1
59,361 - Atu5060 0.29 +1.2
59,362 - Atu5060 0.29 +0.7
59,385 - Atu5060 0.32 +0.1
59,385 - Atu5060 0.32 +0.2
59,402 - Atu5060 0.34 -0.4
59,415 + Atu5060 0.35 +0.1
59,457 - Atu5060 0.41 -0.4
59,490 + Atu5060 0.45 +0.4
59,521 - Atu5060 0.49 -0.0
59,534 - Atu5060 0.50 +0.1
59,534 - Atu5060 0.50 +0.6
59,566 - Atu5060 0.54 +1.2
59,596 - Atu5060 0.58 -0.3
59,649 - Atu5060 0.64 -0.2
59,760 + Atu5060 0.78 +0.1
59,766 - Atu5060 0.79 -0.5
59,818 - Atu5060 0.85 +0.1
59,843 - Atu5060 0.88 -0.7
59,879 + +0.4
59,883 + -0.6
59,912 + +0.8
59,914 + -0.3
59,974 - +0.9
60,132 - Atu5061 0.24 -0.5
60,133 - Atu5061 0.24 +0.1
60,133 - Atu5061 0.24 +0.7
60,399 - Atu5061 0.59 +0.6
60,427 + Atu5061 0.63 +0.5
60,541 - Atu5061 0.78 +0.0
60,560 + Atu5061 0.81 +2.0
60,584 + Atu5061 0.84 +0.2
60,592 - Atu5061 0.85 +0.4
60,746 + -0.0
60,746 + +0.5
60,746 + -0.1
60,754 - -0.1
60,756 + -0.1
60,756 + -1.1
60,756 + +0.8
60,853 + Atu5062 0.15 -0.2
60,854 + Atu5062 0.15 -0.2
60,878 - Atu5062 0.17 -0.1
60,889 + Atu5062 0.18 -0.4
60,897 - Atu5062 0.19 +0.5
60,960 + Atu5062 0.25 +0.5
61,068 + Atu5062 0.35 -0.1
61,104 + Atu5062 0.39 +0.2
61,111 + Atu5062 0.39 +0.9
61,116 + Atu5062 0.40 -0.6
61,124 - Atu5062 0.41 +0.4
61,156 + Atu5062 0.44 -0.1
61,164 - Atu5062 0.44 +0.1
61,164 - Atu5062 0.44 +0.6
61,221 - Atu5062 0.50 +0.2
61,226 + Atu5062 0.50 -0.0
61,258 + Atu5062 0.53 -0.3
61,266 - Atu5062 0.54 +0.6
61,266 - Atu5062 0.54 -0.3
61,266 - Atu5062 0.54 -0.7
61,266 - Atu5062 0.54 -0.7
61,271 - Atu5062 0.55 -1.8
61,304 - Atu5062 0.58 -0.2
61,318 + Atu5062 0.59 +0.5
61,441 + Atu5062 0.71 +0.5
61,456 + Atu5062 0.72 +0.1
61,459 - Atu5062 0.73 +0.1
61,474 - Atu5062 0.74 -0.0
61,485 - Atu5062 0.75 +0.4
61,523 + Atu5062 0.79 +0.3
61,523 + Atu5062 0.79 +0.5
61,531 - Atu5062 0.80 -0.8
61,565 + Atu5062 0.83 -0.0
61,565 + Atu5062 0.83 +0.4
61,573 - Atu5062 0.84 +0.4
61,573 - Atu5062 0.84 -0.3
61,573 - Atu5062 0.84 +0.1

Or see this region's nucleotide sequence