Strain Fitness in Agrobacterium fabrum C58 around Atu0048

Experiment: Maltitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0047 and Atu0048 are separated by 180 nucleotidesAtu0048 and Atu0049 are separated by 183 nucleotidesAtu0049 and Atu0050 are separated by 60 nucleotides Atu0047: Atu0047 - malate synthase G, at 47,736 to 49,970 Atu0047 Atu0048: Atu0048 - hypothetical protein, at 50,151 to 50,864 Atu0048 Atu0049: Atu0049 - hypothetical protein, at 51,048 to 51,533 Atu0049 Atu0050: Atu0050 - two component response regulator, at 51,594 to 52,181 Atu0050 Position (kb) 50 51Strain fitness (log2 ratio) -1 0 1at 49.239 kb on - strand, within Atu0047at 49.243 kb on - strand, within Atu0047at 49.482 kb on + strand, within Atu0047at 49.590 kb on + strand, within Atu0047at 49.614 kb on - strand, within Atu0047at 49.629 kb on - strand, within Atu0047at 49.642 kb on + strand, within Atu0047at 49.642 kb on + strand, within Atu0047at 49.642 kb on + strand, within Atu0047at 49.642 kb on + strand, within Atu0047at 49.712 kb on + strand, within Atu0047at 49.802 kb on + strandat 49.877 kb on - strandat 49.891 kb on + strandat 49.899 kb on - strandat 49.951 kb on + strandat 49.951 kb on + strandat 50.168 kb on + strandat 50.202 kb on - strandat 50.207 kb on - strandat 50.217 kb on - strandat 50.221 kb on - strandat 50.221 kb on - strandat 50.228 kb on + strand, within Atu0048at 50.279 kb on + strand, within Atu0048at 50.287 kb on + strand, within Atu0048at 50.296 kb on + strand, within Atu0048at 50.309 kb on - strand, within Atu0048at 50.309 kb on - strand, within Atu0048at 50.314 kb on - strand, within Atu0048at 50.330 kb on - strand, within Atu0048at 50.437 kb on + strand, within Atu0048at 50.490 kb on - strand, within Atu0048at 50.506 kb on - strand, within Atu0048at 50.536 kb on + strand, within Atu0048at 50.554 kb on - strand, within Atu0048at 50.593 kb on - strand, within Atu0048at 50.635 kb on + strand, within Atu0048at 50.673 kb on + strand, within Atu0048at 50.673 kb on + strand, within Atu0048at 50.681 kb on - strand, within Atu0048at 50.690 kb on - strand, within Atu0048at 50.710 kb on + strand, within Atu0048at 50.762 kb on + strand, within Atu0048at 50.769 kb on + strand, within Atu0048at 50.814 kb on + strandat 50.841 kb on + strandat 50.841 kb on + strandat 50.841 kb on + strandat 50.841 kb on + strandat 50.849 kb on - strandat 50.893 kb on + strandat 50.900 kb on + strandat 50.900 kb on + strandat 50.900 kb on + strandat 50.956 kb on - strandat 51.023 kb on - strandat 51.044 kb on + strandat 51.109 kb on - strand, within Atu0049at 51.127 kb on + strand, within Atu0049at 51.388 kb on + strand, within Atu0049at 51.396 kb on - strand, within Atu0049at 51.560 kb on + strandat 51.568 kb on - strandat 51.696 kb on - strand, within Atu0050at 51.771 kb on - strand, within Atu0050at 51.771 kb on - strand, within Atu0050at 51.783 kb on + strand, within Atu0050at 51.817 kb on + strand, within Atu0050at 51.817 kb on + strand, within Atu0050at 51.822 kb on + strand, within Atu0050

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Per-strain Table

Position Strand Gene LocusTag Fraction Maltitol (C)
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49,239 - Atu0047 0.67 +0.5
49,243 - Atu0047 0.67 +0.5
49,482 + Atu0047 0.78 +1.1
49,590 + Atu0047 0.83 -0.1
49,614 - Atu0047 0.84 -0.2
49,629 - Atu0047 0.85 -0.4
49,642 + Atu0047 0.85 -0.4
49,642 + Atu0047 0.85 +0.9
49,642 + Atu0047 0.85 +0.2
49,642 + Atu0047 0.85 +0.2
49,712 + Atu0047 0.88 +0.6
49,802 + -0.2
49,877 - -0.3
49,891 + -0.4
49,899 - -0.3
49,951 + -0.3
49,951 + -0.9
50,168 + +0.6
50,202 - +0.5
50,207 - +0.7
50,217 - +0.1
50,221 - -0.7
50,221 - +0.1
50,228 + Atu0048 0.11 -0.3
50,279 + Atu0048 0.18 +0.1
50,287 + Atu0048 0.19 +0.3
50,296 + Atu0048 0.20 +0.8
50,309 - Atu0048 0.22 -0.8
50,309 - Atu0048 0.22 +0.1
50,314 - Atu0048 0.23 +0.7
50,330 - Atu0048 0.25 +0.5
50,437 + Atu0048 0.40 +0.2
50,490 - Atu0048 0.47 +0.0
50,506 - Atu0048 0.50 +0.5
50,536 + Atu0048 0.54 +0.3
50,554 - Atu0048 0.56 +0.3
50,593 - Atu0048 0.62 +0.3
50,635 + Atu0048 0.68 +1.1
50,673 + Atu0048 0.73 +0.4
50,673 + Atu0048 0.73 +0.2
50,681 - Atu0048 0.74 +0.4
50,690 - Atu0048 0.75 +0.4
50,710 + Atu0048 0.78 +0.8
50,762 + Atu0048 0.86 -0.1
50,769 + Atu0048 0.87 -0.0
50,814 + +0.3
50,841 + -0.6
50,841 + -0.2
50,841 + +0.6
50,841 + +1.1
50,849 - +0.2
50,893 + +0.3
50,900 + +0.4
50,900 + +0.6
50,900 + +0.3
50,956 - +0.3
51,023 - -0.4
51,044 + +0.4
51,109 - Atu0049 0.13 +0.5
51,127 + Atu0049 0.16 -0.2
51,388 + Atu0049 0.70 -0.6
51,396 - Atu0049 0.72 -0.3
51,560 + +0.3
51,568 - -0.4
51,696 - Atu0050 0.17 +0.7
51,771 - Atu0050 0.30 +0.1
51,771 - Atu0050 0.30 +0.1
51,783 + Atu0050 0.32 -0.9
51,817 + Atu0050 0.38 -1.4
51,817 + Atu0050 0.38 +1.3
51,822 + Atu0050 0.39 +0.1

Or see this region's nucleotide sequence